Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1398 ATGGGCATTGAAACAGTTCAGAATGACGTCATTTTCCGGTCAAAACTGCCGGACATCTACATCCCAAAGCACCTTCCTCTTCACTCCTACTGCCTACACGAAAACGCCGCCAAAATCGGCGACCGGACTTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACAACGACGTCGATCTGTCCGCACGCAAAGTCGCCGCCGGATTAAACAAGCTCGGCATTACAAAAGGCGATGTAATTATGCTCCTCCTCCCAAATTCGCCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCATACCTCGGCGCAATTATGACGGCGGCGAATCCTTTCTTCACAGCAGCGGAAATCGCAAAGCAAGCAAAAGGATCAAAATCAAAATTAATCGTAACGCAATCGTCGTATTACGAAAAAGTAAAGGAAATAACAGAGGAATTAGCCGACGTTAAAATCATGACGGTCGATTCTCCACCAGAGGGTTGTTTATGGTTCGGCGATCTAATCAAAGCCGAGGAAGGAGATACTCCGAGGGTGGAAATCGACCCAGACGACGTCGTTGCGCTACCTTATTCCTCTGGAACAACAGGATTACCGAAAGGCGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATCTGTATTATGGAAATGAGGATGTGATTTTGTGTGTTTTGCCGTTGTTTCATATTTATTCGCTTAATTCGGTTTTGCTCTGTGGATTACGAGCCGGCGCTGCGATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGTGGAGAAATACAGAGTGTCCATTGCGCCGATTGTGCCGCCCATTGTTTTGGCTATTGCCAAGTCGCCGGACCTTGAGAAGTATGATCTTTCGTCCATCAGAGTGATCAAATGCGGCGGCGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCCGTGCTCGGCCAGGGATACGGAATGACGGAGGCGGGTCCAGTCCTAACAATGGGATTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCCGGCGCCTGTGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAACCGGCAGCTCATTGCCTCGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCGGAGGCGACGGCGGCGACAATCGACAAGGACGGGTGGTTGCACACCGGTGACATCGGATTCATCGACGACGATGACGAGCTGTTCATCGTGGATCGGTTGAAGGAACTGATAAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTTGAAGCTCTGTTGCTGACTCATCCGGTGATTTCGGATGCGGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTCGTCGTGAAATTGAAGAATTCTGAAGTCACTGAGGATGAAATTAAACTATTTGTTTCAAAACAGGTGGTTTTCTACAAAAGAATCAACCGGGTATTTTTCATAGATGCAATTCCCAAATCGCCCTCAGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAATTGGCAGCTGCTTTTCCAAATTCTAATTAA 1641 48.69 MGIETVQNDVIFRSKLPDIYIPKHLPLHSYCLHENAAKIGDRTCLINGVTGESFTYNDVDLSARKVAAGLNKLGITKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKSKLIVTQSSYYEKVKEITEELADVKIMTVDSPPEGCLWFGDLIKAEEGDTPRVEIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGAAILIMPKFEIGLLLQLVEKYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKCGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKLFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAAAFPNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27656377 27660879 + CaPI482276_10g013980.1 Cam10g1398 138061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1398 546 CDD 4CL 21 534 - -
Cam10g1398 546 Gene3D - 5 438 IPR042099 -
Cam10g1398 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Cam10g1398 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Cam10g1398 546 Gene3D - 439 541 IPR045851 -
Cam10g1398 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - GO:0016405(PANTHER)
Cam10g1398 546 SUPERFAMILY Acetyl-CoA synthetase-like 20 540 - -
Cam10g1398 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Cam10g1398 546 Pfam AMP-binding enzyme 33 402 IPR000873 -
Cam10g1398 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1470 Cam-Chr6:26116578 Cam10g1398 Cam-Chr10:27656377 9.00E-209 dispersed
Cam09g0354 Cam-Chr9:3882537 Cam10g1398 Cam-Chr10:27656377 3.40E-224 dispersed
Cam09g0355 Cam-Chr9:3891845 Cam10g1398 Cam-Chr10:27656377 2.60E-224 dispersed
Cam10g1398 Cam-Chr10:27656377 Cam11g1290 Cam-Chr11:25467026 5.80E-208 dispersed
Cam01g2574 Cam-Chr1:37375136 Cam10g1398 Cam-Chr10:27656377 1.40E-31 transposed
Cam02g0781 Cam-Chr2:9702703 Cam10g1398 Cam-Chr10:27656377 7.30E-190 transposed
Cam03g0282 Cam-Chr3:3962252 Cam10g1398 Cam-Chr10:27656377 1.20E-115 transposed
Cam05g1685 Cam-Chr5:25147594 Cam10g1398 Cam-Chr10:27656377 1.50E-102 transposed
Cam05g2339 Cam-Chr5:31451138 Cam10g1398 Cam-Chr10:27656377 3.60E-96 transposed
Cam07g0216 Cam-Chr7:3293407 Cam10g1398 Cam-Chr10:27656377 5.00E-93 transposed
Cam10g0595 Cam-Chr10:9118026 Cam10g1398 Cam-Chr10:27656377 3.20E-29 transposed
Cam10g1974 Cam-Chr10:33665979 Cam10g1398 Cam-Chr10:27656377 4.30E-110 transposed
Cam11g1389 Cam-Chr11:26559920 Cam10g1398 Cam-Chr10:27656377 3.40E-115 transposed
Cam10g1398 Cam-Chr10:27656377 Cam09g0353 Cam-Chr9:3875424 8.00E-226 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1398 K01904 - csv:101215427 1004.2