Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1427 ATGGCTGGTACAGATACTTCAGCAGTAGGCATTCAGTGGGCAATAGCTGAACTAATCAACCATCCTGAAGTGTTGAAAAGGGTTAGAAAGGAAATAGAATCAGTGGTTGGAACTTCACGAAGACTTGTGGAAGAAGAAGACATTCCTCAACTCTCTTACTTGCAAGCTGTTGTGAAGGAAACTTTGAGGCTCTACCCACCAGTACCAGTCACAATAAGAGAATCTCGTCAAAGTTGCAAAATTGGAGGCTACGACGTGCCATGCAAAACAACTGTGGCAATCAATCTCTTTGCAATTATGAGAGACCCTCAAGTGTGTAGTGAACCTAATGAATTTCGTCCCGAGAGGTTTTTGGCTTCATCGTCAAAACGAGAACAAATTGAGACCAATAAGGGACATGGTTTCGACTTCATTCCGTTCGGAGGAGGAAGGAGAGCATGTGCCGGTGCAACCTTCGCATATAGCATGATGAATACAACAATGGCTACTCTGGTTCAGTGCTTTGATTGGAAGGACAAGGGTTGA 525 44.0 MAGTDTSAVGIQWAIAELINHPEVLKRVRKEIESVVGTSRRLVEEEDIPQLSYLQAVVKETLRLYPPVPVTIRESRQSCKIGGYDVPCKTTVAINLFAIMRDPQVCSEPNEFRPERFLASSSKREQIETNKGHGFDFIPFGGGRRACAGATFAYSMMNTTMATLVQCFDWKDKG 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27930996 27931563 + CaPI482276_10g014270.1 Cam10g1427 138090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1427 174 PRINTS P450 superfamily signature 56 67 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS P450 superfamily signature 147 158 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS P450 superfamily signature 2 19 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS P450 superfamily signature 138 147 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS E-class P450 group I signature 147 170 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS E-class P450 group I signature 11 37 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS E-class P450 group I signature 95 119 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS E-class P450 group I signature 137 147 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PRINTS E-class P450 group I signature 55 73 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 SUPERFAMILY Cytochrome P450 1 171 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 Pfam Cytochrome P450 1 171 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 140 149 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cam10g1427 174 Gene3D Cytochrome P450 1 174 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam10g1427 174 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 171 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1427 Cam-Chr10:27930996 Cam10g1423 Cam-Chr10:27907183 4.90E-52 dispersed
Cam10g1424 Cam-Chr10:27916961 Cam10g1427 Cam-Chr10:27930996 1.80E-54 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1427 K23814 - vvi:100247724 234.572