Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1438 ATGGCGTTGGCCAGTCGCATCCGATCCACCATCCCTGCCCTCAATAAGTTTTGGAGATCCGAATCCTCATGCACTCCGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAAATGAAGGAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATCTAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGCCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAACGAAATTTCTGCTGAAGCTAAATTTTCAGACACTGTAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCAGCACAAGAAGAGAAAGAGTTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGAGCGCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTAACTCTTGATGCATTTCTTGGGGTCTCAAATGCAGAAGAGGAAAAAAAAAAGTACCAGATGTTGGAAGAGCACACCAATATTATAAAGATTTTCCTTGATAAATTTGGGGTGTCGAAGGCCCCACTTTTCTCTGGATGGTTTTATGATCCATCTTCTGGGGGAAGTTTCACCCTCCTCAAGTAA 867 43.02 MALASRIRSTIPALNKFWRSESSCTPLSRTYAATSGKNEGKVKVPIALFGGSGNYASALYLAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDTVKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPAQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLDAFLGVSNAEEEKKKYQMLEEHTNIIKIFLDKFGVSKAPLFSGWFYDPSSGGSFTLLK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28030492 28035809 + CaPI482276_10g014380.1 Cam10g1438 138101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1438 288 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 186 205 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 PANTHER ATP SYNTHASE DELTA CHAIN 1 227 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cam10g1438 288 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
Cam10g1438 288 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cam10g1438 288 Gene3D - 52 144 IPR026015 -
Cam10g1438 288 NCBIfam ATP synthase F1 subunit delta 54 223 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0700 Cam-Chr8:5572975 Cam10g1438 Cam-Chr10:28030492 4.20E-09 transposed
Cam10g1438 Cam-Chr10:28030492 Cam09g0413 Cam-Chr9:4478935 1.10E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1438 K02137 - rcu:8272168 332.028