Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1442 ATGTGTGGTGGTCCAGAACAGTCCAATTCTGCATCGACTACATCGGCAAACTCAACTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGCTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGGTACTTCTGGTGGATCTGTGAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAACAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGGTTTGGAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACCGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGTTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGATGGAACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTTTAGAGGATTTGAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCCGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCGAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGTGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 45.91 MCGGPEQSNSASTTSANSTNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCGTSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28090514 28092691 - CaPI482276_10g014420.1 Cam10g1442 138105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1442 725 MobiDBLite consensus disorder prediction 194 241 - -
Cam10g1442 725 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Cam10g1442 725 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Cam10g1442 725 Gene3D - 297 360 - -
Cam10g1442 725 MobiDBLite consensus disorder prediction 194 229 - -
Cam10g1442 725 SUPERFAMILY Ankyrin repeat 36 159 IPR036770 -
Cam10g1442 725 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
Cam10g1442 725 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
Cam10g1442 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 322 IPR000571 GO:0046872(InterPro)
Cam10g1442 725 MobiDBLite consensus disorder prediction 401 423 - -
Cam10g1442 725 Gene3D - 6 202 IPR036770 -
Cam10g1442 725 Pfam Ankyrin repeats (3 copies) 45 149 IPR002110 GO:0005515(InterPro)
Cam10g1442 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872(InterPro)
Cam10g1442 725 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
Cam10g1442 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872(InterPro)
Cam10g1442 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872(InterPro)
Cam10g1442 725 PANTHER UNKEMPT FAMILY MEMBER 70 674 IPR045234 -
Cam10g1442 725 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
Cam10g1442 725 PRINTS Ankyrin repeat signature 81 96 IPR002110 GO:0005515(InterPro)
Cam10g1442 725 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0436 Cam-Chr7:6015143 Cam10g1442 Cam-Chr10:28090514 6.10E-120 dispersed
Cam10g1442 Cam-Chr10:28090514 Cam10g1676 Cam-Chr10:30768265 1.30E-252 dispersed
Cam10g1442 Cam-Chr10:28090514 Cam02g2020 Cam-Chr2:33213292 9.30E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52760 PF12796 Ank_2 5.50E-08 CL0465 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1442 - - - 0.0