Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g1442 | ATGTGTGGTGGTCCAGAACAGTCCAATTCTGCATCGACTACATCGGCAAACTCAACTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGCTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGGTACTTCTGGTGGATCTGTGAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAACAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGGTTTGGAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACCGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGTTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGATGGAACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTTTAGAGGATTTGAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCCGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCGAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGTGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG | 2178 | 45.91 | MCGGPEQSNSASTTSANSTNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCGTSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV | 725 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28090514 | 28092691 | - | CaPI482276_10g014420.1 | Cam10g1442 | 138105 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g1442 | 725 | MobiDBLite | consensus disorder prediction | 194 | 241 | - | - | |
Cam10g1442 | 725 | ProSiteProfiles | Ankyrin repeat region circular profile. | 115 | 149 | - | - | |
Cam10g1442 | 725 | FunFam | Zinc finger CCCH domain-containing protein 66 | 255 | 323 | - | - | |
Cam10g1442 | 725 | Gene3D | - | 297 | 360 | - | - | |
Cam10g1442 | 725 | MobiDBLite | consensus disorder prediction | 194 | 229 | - | - | |
Cam10g1442 | 725 | SUPERFAMILY | Ankyrin repeat | 36 | 159 | IPR036770 | - | |
Cam10g1442 | 725 | SMART | ANK_2a | 80 | 110 | IPR002110 | GO:0005515(InterPro) | |
Cam10g1442 | 725 | SMART | ANK_2a | 115 | 147 | IPR002110 | GO:0005515(InterPro) | |
Cam10g1442 | 725 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 301 | 322 | IPR000571 | GO:0046872(InterPro) | |
Cam10g1442 | 725 | MobiDBLite | consensus disorder prediction | 401 | 423 | - | - | |
Cam10g1442 | 725 | Gene3D | - | 6 | 202 | IPR036770 | - | |
Cam10g1442 | 725 | Pfam | Ankyrin repeats (3 copies) | 45 | 149 | IPR002110 | GO:0005515(InterPro) | |
Cam10g1442 | 725 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 324 | IPR000571 | GO:0046872(InterPro) | |
Cam10g1442 | 725 | ProSiteProfiles | Ankyrin repeat profile. | 115 | 150 | IPR002110 | GO:0005515(InterPro) | |
Cam10g1442 | 725 | SMART | c3hfinal6 | 332 | 355 | IPR000571 | GO:0046872(InterPro) | |
Cam10g1442 | 725 | SMART | c3hfinal6 | 297 | 323 | IPR000571 | GO:0046872(InterPro) | |
Cam10g1442 | 725 | PANTHER | UNKEMPT FAMILY MEMBER | 70 | 674 | IPR045234 | - | |
Cam10g1442 | 725 | PRINTS | Ankyrin repeat signature | 134 | 148 | IPR002110 | GO:0005515(InterPro) | |
Cam10g1442 | 725 | PRINTS | Ankyrin repeat signature | 81 | 96 | IPR002110 | GO:0005515(InterPro) | |
Cam10g1442 | 725 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam07g0436 | Cam-Chr7:6015143 | Cam10g1442 | Cam-Chr10:28090514 | 6.10E-120 | dispersed | |
Cam10g1442 | Cam-Chr10:28090514 | Cam10g1676 | Cam-Chr10:30768265 | 1.30E-252 | dispersed | |
Cam10g1442 | Cam-Chr10:28090514 | Cam02g2020 | Cam-Chr2:33213292 | 9.30E-129 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52760 | PF12796 | Ank_2 | 5.50E-08 | CL0465 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g1442 | - | - | - | 0.0 |