Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1489 ATGTCTCGCCAAGTTCCGACCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTAGGAGATGAGATCGGAAAAGGAGCATATGGACGAGTCTACAAGGGTCTGGACTTGGAGAATGGGGACTTCGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATCATGCAAGAGATTGACTTACTGAAGAACTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTTTGAAAACAAAGACTCACCTTCACATAATACTCGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCGTTGGTTGCTGTTTATATCTCTCAGGTTCTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTAATTCATCGGGACATAAAGGGTGCGAACATACTGACAACCAAAGAGGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCCGATGTTAATACTCATTCAGTTGTTGGAACACCTTACTGGATGGCACCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACTGTGATTGAACTACTTACATGCGTACCTCCGTATTATGATCTACAGCCTATGCCCGCTCTCTTTCGCATTGTGCAGGACAAGCATCCTCCAATTCCAGATAGCCTATCACCAGATATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCGGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAGAACTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTAAGAAACACTCAACAAGATGGATCAATTGAAGCAGAAATTTCTAACGGAGACAATCAAAACTCTTGCGAAAGCCCTTCGGCAGAGAAAAATGAAGTCACTGATTCTGATTTTAAAGCTGATTCAAGGAAGGAGTTGTCATCAGATGATGCCACTGATGCGAGCAAGTCCCAAAAGCATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAAGTCTAGAAGAAGATACCCTATTGGATCAGGTTCCTACCTTATCCATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGACTTACTACCTCTGAGCCGACTGAGTTTCATGAATCTCATGGTAGAGGCCATGATGAAGTGATAGTGAATGGTGAACTGCCATTGGCAGAATTAAGGAAAGATGCTCCTAGAAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAGTAGATCATTTGGTTTTGAACCTGAAAGTCAGGACAATAGTTTTCAAAAGGTGTCAAAGATGTCAATTGCTTTGGGAGGAGATGAGCTGAGTAAATTTAGTGACACTCCTGGAGATGCTTCCTTGGATGATTTATTCCAACCTCTAGATAAGCACCCCGGGGATCAAGCTGCTGGAGCATCAACATCTCTATCTACTCTACAATCAAACATGGGTAATGTGCCAGTAAATGATGTTGGGAAAAATGACCTGGCCACAAAATTGAGGGCTACAATTGCTCAAAAACAAATGGAAAATGAAATGGGACAGGCAAGTGGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAAAACCTTTTCCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGGTCATTGAGACCTGATGAACCCGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATTGCTATCTTTCATCAAAGACCGGAGCAGAAAATTGTATATGTTACACAGCATGGTCTACTCCCGTTAACTGAGTTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAATGTTGACTTCCAAGAAAATGCCTGTCTTGTTGGTCTAATTCCTCTGGTAATGGGGTTTGCAGTTCCTGATCGTCCCCGAGAAGTCCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTCGCGTGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGACTATGCAAAGTACAGGGACATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTAGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACGCTCTACAGCTTAAATGAGGCAACTCGCTTAGCTTCCATAACAGTTGGGGCGGGATATCCAGTTGATGGTTTAACTCAACGGCCACGATCAGGTCAACTAGATCCTAGCCACCCTATATTCAGTCAGTATGAGGCCTCATTTCCTATGCCTGATCAACCTGATCTTTTGAAGGTCAAACATGGAATAGTTGATCATCACCCATCTTCTGGACCACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCCAATCAATCTGAGAACCGACGCTTTTCCATAGATGCTGATAGGCCTCAATCTAGTAATGCCACAAATGAAGCCTTGGGATCTAAACCGTCAGAGCTTGCGTCTTTGGATAAGGTTTTACATTTAGCAAGCAAGGAATCGTCTGGCTTGGCTTCTAAAGAACATGAAAATGTAGATAGATGGAGAACTGAGCGAATGACGAACTCTAATAGGACTTCCACAGATAGGCCTCCAAAATTGGTGGAACCTGCATCTAATGGATTTCCTACAACATTGGCGGCTACTCAACAAGAGCAAGTTCGGCCCCTTCTAAGTCTGTTGGACAAAGAACCCCCGTCTCGACATTTTTCCGGTCAGCTTGAGTACATGCGCCAACTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCATGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAAGACAATGGAAATGTTGACCCCACTTCTAAGATTTCTCTTAAAACGGTGGCAAAGAAGGTAGGGCCCTTGATTTCCAATGAGGGAGCTGCATCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTACTTTCAGGTTCGGGCGTATTAAATGCTAGACCAGGGAGTGCAACATCCTCTGGACTTCTTTCGCACATGGTTTCAACTCTGAACGCTGATGTTGCAAGGGAATATCTGGCTAAGGTGGCTGATCTATTGCTCGAGTTTGCTCAAGCAGATACAACTGTGAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACGGATCCAAATTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCGAACCTTGAACTCAAAGAAGGGTCGTTGGTGTCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTAATGCATTTTATTATTTCAGACTCTCCTCTGAAACAATATGCATTGCCTCTACTGTGTGATATGGCCCATGCATCTCGTAATTCCAGGGAGCAGTTAAGAGCCCATGGTGGATTAGATGTGTATTTGAGCCTACTTGAGGATGACCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGATAATGACAACCGAAAAGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAATTGGTGAAGTTTTTCCAGTGCTGTCCAGAACAACATTTTGTCCATATATTGGAGCCTTTCTTGAAAATCATCACGAAATCTTCCCGAATCAATACGACATTGGCTGTCAACGGATTGACCCCGTTGCTTATAGCAAGGCTGGACCACCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCAAAGCAGTTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGGGATGGACAACGGTCTGGAGGGCAAGTGTTGGTGAAACAAATGGCCACATCTCTGCTTAAAGCTCTTCATATAAATACTGTTTTGTAA 4269 42.4 MSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNTQQDGSIEAEISNGDNQNSCESPSAEKNEVTDSDFKADSRKELSSDDATDASKSQKHFASGPNFVEEGESLEEDTLLDQVPTLSIHENSSLLTGSGRLTTSEPTEFHESHGRGHDEVIVNGELPLAELRKDAPRKHGEKETSTTSGSRSFGFEPESQDNSFQKVSKMSIALGGDELSKFSDTPGDASLDDLFQPLDKHPGDQAAGASTSLSTLQSNMGNVPVNDVGKNDLATKLRATIAQKQMENEMGQASGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLFPLQAVEFGRLVGSLRPDEPEDVIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLTQRPRSGQLDPSHPIFSQYEASFPMPDQPDLLKVKHGIVDHHPSSGPPEPSRASTSHSQRSDANQSENRRFSIDADRPQSSNATNEALGSKPSELASLDKVLHLASKESSGLASKEHENVDRWRTERMTNSNRTSTDRPPKLVEPASNGFPTTLAATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRQLSGLERHETIMPLLHASNEKKINGEHDFLMAEFAEVSQRGKDNGNVDPTSKISLKTVAKKVGPLISNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDDLWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28603421 28627556 - CaPI482276_10g014890.1 Cam10g1489 138152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1489 1422 SMART serkin_6 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1489 1422 FunFam MAP3K epsilon protein kinase 1 578 786 - -
Cam10g1489 1422 FunFam MAP3K epsilon protein kinase 1 17 306 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 380 395 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 288 355 - -
Cam10g1489 1422 SUPERFAMILY ARM repeat 588 782 IPR016024 -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 842 856 - -
Cam10g1489 1422 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 311 1422 IPR052441 -
Cam10g1489 1422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1489 1422 FunFam MAP3K epsilon protein kinase 1-like 1071 1417 - -
Cam10g1489 1422 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Cam10g1489 1422 CDD STKc_Cdc7_like 19 274 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 420 435 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 436 454 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 832 886 - -
Cam10g1489 1422 Gene3D - 581 785 IPR011989 -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 396 410 - -
Cam10g1489 1422 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
Cam10g1489 1422 SMART arm_5 1202 1241 IPR000225 GO:0005515(InterPro)
Cam10g1489 1422 SMART arm_5 701 744 IPR000225 GO:0005515(InterPro)
Cam10g1489 1422 SMART arm_5 1156 1200 IPR000225 GO:0005515(InterPro)
Cam10g1489 1422 MobiDBLite consensus disorder prediction 469 502 - -
Cam10g1489 1422 Gene3D Transferase(Phosphotransferase) domain 1 17 314 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 869 885 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 900 937 - -
Cam10g1489 1422 SUPERFAMILY ARM repeat 1083 1396 IPR016024 -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 904 922 - -
Cam10g1489 1422 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Cam10g1489 1422 Gene3D - 1073 1417 IPR011989 -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 380 454 - -
Cam10g1489 1422 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1489 1422 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1489 1422 MobiDBLite consensus disorder prediction 320 346 - -
Cam10g1489 1422 MobiDBLite consensus disorder prediction 288 319 - -
Cam10g1489 1422 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1489 1422 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1489 1422 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1489 1422 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g2031 Cam-Chr8:25951119 Cam10g1489 Cam-Chr10:28603421 3.20E-49 dispersed
Cam10g1489 Cam-Chr10:28603421 Cam11g1184 Cam-Chr11:23339758 4.90E-49 dispersed
Cam10g1489 Cam-Chr10:28603421 Cam06g0599 Cam-Chr6:8128047 2.70E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85507 PF00069 Pkinase 1.30E-72 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1489 - - - 0.0