Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1496 ATGAGCTGCTTTAGCTGCTGCGAGGAAGATGGAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGGAAAGCAAAATACAGGAAACAATGGGGGTTATCAAAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTGCCTACCATACCTGTCGAAGAACTGTCAGAAGTAACAGACAACTTTGGAAATGATGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGGATGCTTAAAAATGGGCAGCCTGCTGCGATCAAGAAGTTAGATGCCAGCAAACAGCCTGATGATGAGTTTTTAGCACAGGTCTCCATGGTCTCAAGGCTGAAGCATGGAAATTTTGTTCAATTGCTTGGTTATTGCGTTGATGGGAGTTCCCGCATACTAGTATACGAGTATGCTTCCAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAACCAGGTCCCGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTCGAGTATTTGCATGAAAAGGCTGAGTCCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTCATCTTTGATGATGATGTTGCTAAAATTGCTGACTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCTGAATATGCTATGACTGGTCAATTGAACGCCAAAAGTGATGTATATAGCTTCGGTGTAGTCTTGCTTGAACTTTTGACAGGGAGAAAACCTGTAGATCCTACGCTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAGCTGAGTGAAGATAAAGTTAGGCAGTGCGTTGATGCAAGGCTTGGCGGAGACTACCCCCCAAAGGCGGTAGCAAAGTTAGCAGCTGTTGCTGCCTTGTGTGTGCAGTATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATCTATTAAATGCCCGACCTGGGCCTTCTGGTGATGCATCAAACTCGAGAGATGAAAAGGAGAGAGCAAATAGTTAG 1116 44.98 MSCFSCCEEDGIQKAADNGGMYAGKQNTGNNGGYQKPEAAPAVTQAVKMQPILVPTIPVEELSEVTDNFGNDALIGEGSYGRVYYGMLKNGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHGNFVQLLGYCVDGSSRILVYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNSRDEKERANS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28680809 28685985 - CaPI482276_10g014960.1 Cam10g1496 138159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1496 371 MobiDBLite consensus disorder prediction 351 371 - -
Cam10g1496 371 Gene3D Phosphorylase Kinase; domain 1 33 143 - -
Cam10g1496 371 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1496 371 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Cam10g1496 371 Gene3D Transferase(Phosphotransferase) domain 1 144 365 - -
Cam10g1496 371 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1496 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1496 371 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Cam10g1496 371 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Cam10g1496 371 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Cam10g1496 371 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1496 371 FunFam pto-interacting protein 1 145 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1496 Cam-Chr10:28680809 Cam10g2032 Cam-Chr10:34163794 1.20E-71 dispersed
Cam10g1730 Cam-Chr10:31337629 Cam10g1496 Cam-Chr10:28680809 2.70E-132 transposed
Cam10g1496 Cam-Chr10:28680809 Cam09g0458 Cam-Chr9:4830726 7.80E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85508 PF07714 PK_Tyr_Ser-Thr 6.00E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1496 K13436 - csv:101223136 711.449