Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1498 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTCCTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACGGTGGAATCCGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGATGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGAGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACACATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGACGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAGTTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGATTCTGCATGAACCCCAGAATTTGCTGAACAACGGGGCATTGATGGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAAGTATCTTTGAGATCTTCTAAACCACATGACACGATACCTATATCTGAGACGCCAGTACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCGAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTTGATCTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCGGTGCACATGGGAACAAGCTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCGTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCCCACGTTTTGCGAGCTCAGGTCCTCGATTGGTTATCACATAGTCCTACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTCACAATATACCTACGGCAGACTGAAGCTTCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATTGCTATTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGACCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAAGAAGCTTCAGATGGGTCAACAGAAAGTGGTGAAGATGACAGCCGATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCATTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAATGCGATGGAATTTATTCATGAAATTGGTTGGTTGTTTCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACTCATCCTTGAATCTCGCATTGATGGAGATGGGTTTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTCGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGCATCCATTGATGGAGGGGCCGATAGCTTCCTGTTTAGACCCAATGCCGTAGGCCCAGCTGGTCTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGACGTTTTAGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCATATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGATATTCCTAGTTCTCTCTCGGATAGTAGCTGGAATCAAAAGCCAAACACCGATTTGGCCTCCTCCAGGTTTGAGATTGGTAGGATGGAACTAAAACCTAGTCAGCAGCATTGCAAGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACACCGTCTAGCGCGTCTCTGGTTTACAGACCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTTTGTGTTTGCGTGGCTCTCCTATTTAAAAGCTCACCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTATGGTATAGAGGTGTGTTCACCGGACAACGATTGCTGGGTGGTCGACGGGGACTGA 3072 45.08 MEAGYGGEACQLYGMGPMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALMGKSDLVSTFLSNGPQVSLRSSKPHDTIPISETPVQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEASWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRVQHQIAIVYHGQVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAMFSVKGINLTQPTTRLLCAIEGKYLTQEASDGSTESGEDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGTVDAGGHSSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASIDGGADSFLFRPNAVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDSSWNQKPNTDLASSRFEIGRMELKPSQQHCKLCVRKPLGCGTPSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGIEVCSPDNDCWVVDGD 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28743992 28750870 + CaPI482276_10g014980.1 Cam10g1498 138161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1498 1023 SUPERFAMILY Ankyrin repeat 778 891 IPR036770 -
Cam10g1498 1023 MobiDBLite consensus disorder prediction 357 373 - -
Cam10g1498 1023 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam10g1498 1023 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
Cam10g1498 1023 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Cam10g1498 1023 Gene3D - 751 905 IPR036770 -
Cam10g1498 1023 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam10g1498 1023 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1006 IPR044817 GO:0003677(InterPro)
Cam10g1498 1023 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Cam10g1498 1023 MobiDBLite consensus disorder prediction 345 373 - -
Cam10g1498 1023 MobiDBLite consensus disorder prediction 220 242 - -
Cam10g1498 1023 MobiDBLite consensus disorder prediction 420 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0666 Cam-Chr5:5761178 Cam10g1498 Cam-Chr10:28743992 3.40E-39 dispersed
Cam07g0246 Cam-Chr7:3585139 Cam10g1498 Cam-Chr10:28743992 4.60E-27 dispersed
Cam10g1498 Cam-Chr10:28743992 Cam11g1930 Cam-Chr11:31693150 3.20E-119 dispersed
Cam10g1498 Cam-Chr10:28743992 Cam04g1194 Cam-Chr4:26022179 5.30E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52762 PF03110 SBP 1.00E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1498 - - - 0.0