Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1500 ATGGCAGCCATGGCTCTTTCATCTACATTCACAGGAAAAGCTGTTCCTTTGAATGCACCGACCGAGCTCTCATCCTCGGTTCGCAGCAATGGTAGAGTCTCAATGAGAAGATCTGGAAAGCCAGCGGCTTCCTCAGGCAGCCCATGGTATGGTCCGGACCGTGTCAAGTACCTTGGACCATTCTCTGGTGAGCCTCCATCTTACCTCACAGGGGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCTGCCGATCCTGAGACCTTTGCCAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGTGAGGGTGGCCTAGACTATCTTGGAAACCCAAGTCTTATTCATGCACAGAGTATTTTGGCCATTTGGGCATCTCAAGTAGTGCTAATGGGTGCAGTTGAAGGTTACCGTATTGCCGGAGGACCACTCGGAGAAGTTACCGATCCCATCTACCCAGGTGGTAGCTTTGATCCCCTCGGACTGGCTGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCAATGTTTTCCATGTTCGGGTTTTTTGTACAAGCCATTGTAACAGGAAAGGGTCCTTTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 798 49.37 MAAMALSSTFTGKAVPLNAPTELSSSVRSNGRVSMRRSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28771723 28772520 + CaPI482276_10g015000.1 Cam10g1500 138163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1500 265 MobiDBLite consensus disorder prediction 21 47 - -
Cam10g1500 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cam10g1500 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cam10g1500 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cam10g1500 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cam10g1500 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0750 Cam-Chr3:8378243 Cam10g1500 Cam-Chr10:28771723 2.90E-136 dispersed
Cam03g0751 Cam-Chr3:8384069 Cam10g1500 Cam-Chr10:28771723 6.70E-15 dispersed
Cam08g0186 Cam-Chr8:3849036 Cam10g1500 Cam-Chr10:28771723 1.40E-55 dispersed
Cam10g0600 Cam-Chr10:9201747 Cam10g1500 Cam-Chr10:28771723 6.50E-96 dispersed
Cam10g1500 Cam-Chr10:28771723 Cam11g1928 Cam-Chr11:31668378 3.90E-40 dispersed
Cam10g1500 Cam-Chr10:28771723 Cam01g2494 Cam-Chr1:36640626 1.40E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1500 K08912 - csv:101203342 530.791