Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1514 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGATAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGGAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCAGTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGTATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTACTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGGGTGGAGTCGTTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTCTGTGCCTACTTGGTTTACTGTGGCATGTCAGCGGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAATTTATAATGGACCACCTGAGGTGAAGTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAACTATATCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAGAGGAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACCACAAAACCTGCCTTGACTACAATTTCGAGAAGCCTCTACCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCCTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGAATTCATCCGATGACGAAGATCCTCAAAATGATTTCTCTTAA 1248 43.51 MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYISDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSAEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGIYNGPPEVKLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSNSSDDEDPQNDFS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28889371 28893675 + CaPI482276_10g015140.1 Cam10g1514 138177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1514 415 Pfam Swiss Army Knife protein, DSP-PTPase phosphatase domain 111 186 - -
Cam10g1514 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 394 IPR035892 -
Cam10g1514 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311(InterPro)
Cam10g1514 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 397 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
Cam10g1514 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Cam10g1514 415 SMART PTEN_C2_2 223 394 IPR014020 -
Cam10g1514 415 Pfam C2 domain of PTEN tumour-suppressor protein 314 393 IPR014020 -
Cam10g1514 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Cam10g1514 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Cam10g1514 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Cam10g1514 415 Gene3D - 274 397 - -
Cam10g1514 415 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Cam10g1514 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cam10g1514 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1749 Cam-Chr1:31090180 Cam10g1514 Cam-Chr10:28889371 8.50E-39 dispersed
Cam10g1514 Cam-Chr10:28889371 Cam02g0659 Cam-Chr2:7629061 9.30E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1514 K01110 - csv:101212127 817.379