Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam10g1516 | ATGGCGACCTCAAAACCCCAAAGGTCACCGGAGGAGGTCGAAGACATTATCCTTCGCAAAGTCTTCCTCATTTCTCTCACTGATTCTTCCGATTCCGATTCCAGAATCGTCTATCTCGAGCAAACCGCTGCCGAACTCCTTAGCGAGGGCAAACAATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGTCTTTCCGGAAATTTCCCCTCCGCCGAACCCCCTTTTCAGTACCTAATCGGCTGCTACCGTCGAGCTCATGACGAGACTAAGAAAATCGCTTCCATGAAGGATAAGACTTTGCGCTCTCATATTGAAATTTCCCTCAAGCAAGCAAAGAAGTTGACGATTTCGTATTGTAGGATTCATTTAGGGAATCCTGAATTGTTTTCGGGTGCCGATTTAGGTACTAACTCCAATACTTCCCCTTTGCTTCCTTTGATTTTCTCTGAGGTTGGTAGCTCCGTCGATGGATTTGGGGCTAGTACCAGTGTTGGTGGAGCTTTTCAGTGCCCTCCGGGTTTTCTGGAGGAGTTTCTCCGTGATTCCGATTTTGATACATTAGACCCCATCTTGAAGGGGTTGTATGAGGATTTAAGGGGTAGTGTTCTTAAAGTTTCTGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTTAGGTTTCTGGTCAGTTTTCCTGTTGGTGCTAAATCTCTTGTGAATCATCCTTGGTGGATTCCCACTGGTAAATATTCAAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCAGCTGATTTACTATCTTCATTCACTACAATTAAGACAGTCATGAATAACTTATATGATGGCCTTGCAGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTTGAGTATCTTGCCGAGGTGATAAATAGAAACTCATCCAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGCATGTTCGTTAATCTCAGTGCCATCATGCTACGTCTCTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAGATTGATCCAAAATATGTATGTTATAGTAACCGCTTGGAATTGAGAGGATTAACTGCTCTACATGCTTCATCGGAAGAAGTTACCGAGTGGATTAATAATGGTACTCAGTTGAGAACTGATAACTCTGGGCAGTTCAGCGACAATGAAAGTCGCCTGCTACAATCTCAAGAAGCTTCCAGTTCAGGCAGTAATGCTACTGTTGGATCTTCTACTGCAAAAGCAAGATCGAGTAATGATAAAAGTAGGTACCCTTTCATATGCGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTCAAAGCCATGCAGGGACAAGGGCCCGCCCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTAAGGGATGGGTCACTAATCCAGCAAGCTCTTACTTTTTATCGATTAATGGTCGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAACTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCGGAATATATCAGAAATCCCTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAGGTGGTTCATCCGTTACAGCAACATTATTTGAAGGCCACCAACTATCACTTGAGTATCTTGTTAGGAATCTCTTAAAGCTCTATGTAGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAACATTGCCGAACTTCTTGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGTCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCCGAAATGTCAAATACCGCAGAATGGGAACGGCGACCTGCTCAAGAGAGGCAGGAGAGAACTCGGCTGTTTCACTCCCAAGAAAATATCATCCGAATTGATATGAAATTAGCAAATGAGGACGTGAGTATGCTGGCATTTACTTCTGAGCAGATCACGGCTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCGAAAGAGTTGCTTAAGCAGATCGTTCACATATATGTTCATCTGGCACGAGGTGATTCGGAGAATATTTTCCCAGCTGCCATTTCAAAGGATGGCCGATCGTACAACGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTGGACGAATTGGAGAAGATGGTAGGATAATACGCGAGTTTACTGATCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTGGGAGATATACCGGACGAATTCCTCGACCCAATCCAATACACTTTGATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACAGTTGACAGACCCGTCATTCAAAGACATCTCCTCAGCGATAGCACTGACCCATTCAACCGGTCTCATCTGACTTCTGACATGCTAATACCGAACGAAGAATTGAAAGCAAGAATCGAAGAATTTATCAGGTCACAAGAACTGAAGAAGCAACTGGATGGAGGAGGAGTTGCAATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTGA | 3126 | 43.31 | MATSKPQRSPEEVEDIILRKVFLISLTDSSDSDSRIVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSGNFPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSHIEISLKQAKKLTISYCRIHLGNPELFSGADLGTNSNTSPLLPLIFSEVGSSVDGFGASTSVGGAFQCPPGFLEEFLRDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELRGLTALHASSEEVTEWINNGTQLRTDNSGQFSDNESRLLQSQEASSSGSNATVGSSTAKARSSNDKSRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGSLIQQALTFYRLMVVWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRGGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDSENIFPAAISKDGRSYNEQLFNAAAVVLGRIGEDGRIIREFTDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNEELKARIEEFIRSQELKKQLDGGGVAMQSSKATIQPTSGEMLID | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28902633 | 28909450 | - | CaPI482276_10g015160.1 | Cam10g1516 | 138179 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam10g1516 | 1041 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 940 | 1018 | IPR013083 | - | |
| Cam10g1516 | 1041 | SUPERFAMILY | RING/U-box | 933 | 1011 | - | - | |
| Cam10g1516 | 1041 | PANTHER | UBIQUITINATION FACTOR E4 | 8 | 1016 | IPR045132 | GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(PANTHER)|GO:0034450(InterPro)|GO:0036503(InterPro) | |
| Cam10g1516 | 1041 | SMART | Ubox_2 | 944 | 1007 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cam10g1516 | 1041 | Pfam | Ubiquitin elongating factor core | 259 | 924 | IPR019474 | GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro) | |
| Cam10g1516 | 1041 | ProSiteProfiles | U-box domain profile. | 940 | 1014 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cam10g1516 | 1041 | FunFam | Ubiquitin conjugation factor e4 a | 940 | 1018 | - | - | |
| Cam10g1516 | 1041 | Pfam | U-box domain | 941 | 1011 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cam10g1516 | 1041 | Coils | Coil | 519 | 546 | - | - | |
| Cam10g1516 | 1041 | MobiDBLite | consensus disorder prediction | 423 | 462 | - | - | |
| Cam10g1516 | 1041 | CDD | RING-Ubox_UBE4A | 943 | 1011 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam10g1516 | K10597 | - | csv:101211398 | 1947.94 |