Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam10g1546 | ATGTGGGAAAAGAGAGATTCATCTCTACATATCTTCATTTTAGTTCACTCTCTCCAGTCTGCCGGACTCCGTACAGAACTCCTGCGAGCGGCAATGAATATGGAGCAGTATCTTCTGAAGGACTTCGAAGTTGAGCCAAAACATCCTTCAGAGGAAGCCTTGAGGAGATGGAGATCTGCCGTCTCTATCGTCAGAAATCGACGACGGAGGTTCCGAAATGTTGCAGATCTCGATAAACGCTCTGAGGCCGAGAAAAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTACAGTTTATTGATGCCGTGAATCGAGATGAGTACCATCTGTCAGATGAGGCTAGGAGAGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTTGCACTAGACACAGGTGTCACTGAAAAAGATACATCCAAGAGACAAGAGATTTATGGTTACAATCGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTATGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGTATTGCCACAGAAGGGTGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATATTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAGGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACGGTTGGTATGAAAACTGAATGGGGAAAACTGATGGAAACTCTCAGTGAGGGAGGAGAAGACGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCGTTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGTTCGGTCAGTTGCATTTGCACAGATAAGACTGGGACATTAACCACAAACCATATGATAGTTAGCCGTTCATGGGTATGTGAAAATTTTATGGAGAATAAAGACCATGGGAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGATGTTTTAGGCATATTTTTGCAGTCCATATTTCAAAATACCAGCTGCGAAGTGACTAAAGATAAAGAGGGGAAGAACTCAATCGTTGGTGGAACACCAACGGAATCAGCACTATTGGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTATATTGATTCCAATGGAGAATCAATCTATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCACTAGTTTTGCCAATGAAGCCTTGAGGACACTTTGCTTGGCCTTCAAAGATATAGAGGACTCCGGTGACAAATCAATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGTGACAACATTAATACAGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCGATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAGTTATACCAAAACTGCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAGTACACATTGGTTAACAATTTGCGGAGTATGGGTGAGGTTGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGAACTGAGGTGGCCAAAGAAAATGCCGATGTGATCATAATGGATGATAATTTTTCAACTATTGTAAATGTTGCGAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTCGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTATTGGTCAGAGTATCTATCAACTTGCTGTACTGGCAGTTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATTGAAAAGATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTGGGGTTTCAAATAATAATAATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTATGGGGACTGAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTCGTGTTGAAGTTCATCCCTGTTCGTAAAGAAGTATTCACAGCCCAACATGATGGTTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA | 3201 | 41.99 | MWEKRDSSLHIFILVHSLQSAGLRTELLRAAMNMEQYLLKDFEVEPKHPSEEALRRWRSAVSIVRNRRRRFRNVADLDKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNRDEYHLSDEARRAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVSVALDTGVTEKDTSKRQEIYGYNRYTEKPSRPFWVYVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSVSCICTDKTGTLTTNHMIVSRSWVCENFMENKDHGSVDKLKSEISEDVLGIFLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKYIDSNGESIYLTEEKVNNATNVITSFANEALRTLCLAFKDIEDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPNFRNLSPEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFGGKQLLGLNGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVRKEVFTAQHDGYEPIPSGPELA | 1066 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 29127082 | 29140964 | - | CaPI482276_10g015460.1 | Cam10g1546 | 138209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam10g1546 | 1066 | NCBIfam | HAD-IC family P-type ATPase | 749 | 871 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam10g1546 | 1066 | NCBIfam | HAD-IC family P-type ATPase | 581 | 728 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam10g1546 | 1066 | NCBIfam | HAD-IC family P-type ATPase | 235 | 509 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam10g1546 | 1066 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 485 | 491 | IPR018303 | - | |
| Cam10g1546 | 1066 | PRINTS | H+-transporting ATPase (proton pump) signature | 642 | 660 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam10g1546 | 1066 | PRINTS | H+-transporting ATPase (proton pump) signature | 783 | 799 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam10g1546 | 1066 | PRINTS | H+-transporting ATPase (proton pump) signature | 815 | 840 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam10g1546 | 1066 | Gene3D | - | 165 | 366 | - | - | |
| Cam10g1546 | 1066 | FunFam | Calcium-transporting ATPase | 800 | 1046 | - | - | |
| Cam10g1546 | 1066 | Pfam | haloacid dehalogenase-like hydrolase | 675 | 795 | - | - | |
| Cam10g1546 | 1066 | Pfam | E1-E2 ATPase | 266 | 461 | - | - | |
| Cam10g1546 | 1066 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 39 | 82 | IPR024750 | GO:0005516(InterPro) | |
| Cam10g1546 | 1066 | SMART | Cation_ATPase_N_a_2 | 146 | 220 | IPR004014 | - | |
| Cam10g1546 | 1066 | SUPERFAMILY | HAD-like | 482 | 888 | IPR036412 | - | |
| Cam10g1546 | 1066 | CDD | P-type_ATPase_Ca_PMCA-like | 173 | 916 | - | - | |
| Cam10g1546 | 1066 | SFLD | p-type atpase | 465 | 835 | IPR044492 | - | |
| Cam10g1546 | 1066 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 142 | 1045 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cam10g1546 | 1066 | FunFam | Calcium-transporting ATPase | 245 | 366 | - | - | |
| Cam10g1546 | 1066 | Gene3D | - | 49 | 110 | - | - | |
| Cam10g1546 | 1066 | Gene3D | - | 493 | 688 | IPR023299 | GO:0000166(InterPro) | |
| Cam10g1546 | 1066 | Pfam | Cation transporting ATPase, C-terminus | 868 | 1042 | IPR006068 | - | |
| Cam10g1546 | 1066 | SUPERFAMILY | Calcium ATPase, transduction domain A | 268 | 364 | IPR008250 | - | |
| Cam10g1546 | 1066 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 489 | 693 | IPR023299 | GO:0000166(InterPro) | |
| Cam10g1546 | 1066 | Gene3D | - | 198 | 1042 | - | - | |
| Cam10g1546 | 1066 | Gene3D | - | 480 | 828 | IPR023214 | - | |
| Cam10g1546 | 1066 | PANTHER | CATION TRANSPORTING ATPASE | 109 | 1044 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cam10g1546 | 1066 | SFLD | Haloacid Dehalogenase | 465 | 835 | - | - | |
| Cam10g1546 | 1066 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 497 | - | - | |
| Cam10g1546 | 1066 | PRINTS | P-type cation-transporting ATPase superfamily signature | 703 | 713 | - | - | |
| Cam10g1546 | 1066 | PRINTS | P-type cation-transporting ATPase superfamily signature | 807 | 819 | - | - | |
| Cam10g1546 | 1066 | PRINTS | P-type cation-transporting ATPase superfamily signature | 783 | 802 | - | - | |
| Cam10g1546 | 1066 | PRINTS | P-type cation-transporting ATPase superfamily signature | 681 | 692 | - | - | |
| Cam10g1546 | 1066 | PRINTS | P-type cation-transporting ATPase superfamily signature | 314 | 328 | - | - | |
| Cam10g1546 | 1066 | FunFam | Calcium-transporting ATPase | 493 | 688 | - | - | |
| Cam10g1546 | 1066 | FunFam | Calcium-transporting ATPase | 681 | 828 | - | - | |
| Cam10g1546 | 1066 | Pfam | Cation transporter/ATPase, N-terminus | 149 | 215 | IPR004014 | - | |
| Cam10g1546 | 1066 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 149 | 1045 | IPR023298 | - | |
| Cam10g1546 | 1066 | FunFam | Calcium-transporting ATPase | 49 | 109 | - | - | |
| Cam10g1546 | 1066 | Pfam | Cation transport ATPase (P-type) | 539 | 624 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g1806 | Cam-Chr1:31610617 | Cam10g1546 | Cam-Chr10:29127082 | 0.00E+00 | dispersed | |
| Cam05g2258 | Cam-Chr5:30759899 | Cam10g1546 | Cam-Chr10:29127082 | 0.00E+00 | dispersed | |
| Cam09g0723 | Cam-Chr9:7275488 | Cam10g1546 | Cam-Chr10:29127082 | 1.00E-234 | dispersed | |
| Cam10g1546 | Cam-Chr10:29127082 | Cam11g1173 | Cam-Chr11:23061659 | 1.00E-264 | dispersed | |
| Cam01g0825 | Cam-Chr1:9269295 | Cam10g1546 | Cam-Chr10:29127082 | 0.00E+00 | transposed | |
| Cam10g1546 | Cam-Chr10:29127082 | Cam04g0641 | Cam-Chr4:20412835 | 7.70E-15 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam10g1546 | K01537 | - | csv:101206199 | 1871.67 |