Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1553 ATGGATTTCTCCATAACTCCGAACCCCATCAATTTGGAGAGTCGATTCCACTACCACATCCTTTTGGCGCTTCTTCCAACTTCATCTTACTCAACCTCTCCCACCGTCTCCTCCCCCTCTCGGCTCTCGCTGCGGCCTGTCCCTCATCTTCCTCCACGTTCTCACCATCGCTACGCCATGGTTTGCCGCTGCTTCTGCCCGGTGGTTCAGAGTCCACACATGTGGCATGCAATGGTACCCTCCCAGGCCATCCAAATTCCGGAGGACAACATAGTCTTGGTTGCAGTTTCCATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACCCGAACCCGGTGCTTGTAGTGCTGCTGCTGCTGCCGGAAGAGGAACGGCGGAATCTTCCGAGGTTGTAATGGCGAATGATCAGCTTCTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCTAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCTGCTGCTAGGGCATACGATCTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCGAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTATGCCGGGTCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTCGTCCCCAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCCAGTGCTGGCTCAAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCGCCCATCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGACAGATCATGGGAAAGTGGTCAAAACACATACAAGTCATGGTGGTGATCCCAGTGAGAGATTTGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATGTGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCTCTCGTCTCTGTTCTTCCTAGTGGACTTTCTCGTACAGCTGAGTGTTTTACACCCAGTTATCTGGTGAACATAGTTGGAAGGATAGGAATGGCTGGAAGCTTGCGTGTGGATGACATTGTCCTGCTGTATGTACCCCCAGAAGAGAAGGACCAACAGAACCATGAGCCAAGGTTAACCATGGCCGAAGTCGAGCCCCCTCAAGAGAGGGTCCAACAACCCAAGTGA 1710 47.78 MDFSITPNPINLESRFHYHILLALLPTSSYSTSPTVSSPSRLSLRPVPHLPPRSHHRYAMVCRCFCPVVQSPHMWHAMVPSQAIQIPEDNIVLVAVSMASSSSDPGFKPEPGACSAAAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRMPGPDYVNSINYGAGDDQATESEFVPSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTAHPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKTDHGKVVKTHTSHGGDPSERFGVAFGTSGGLPLQRNVFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPSGLSRTAECFTPSYLVNIVGRIGMAGSLRVDDIVLLYVPPEEKDQQNHEPRLTMAEVEPPQERVQQPK 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29198638 29208075 - CaPI482276_10g015530.1 Cam10g1553 138216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1553 569 Gene3D AP2/ERF domain 172 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1553 569 Coils Coil 401 429 - -
Cam10g1553 569 SMART rav1_2 172 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1553 569 ProSiteProfiles AP2/ERF domain profile. 172 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1553 569 SUPERFAMILY DNA-binding domain 171 236 IPR016177 GO:0003677(InterPro)
Cam10g1553 569 PRINTS Ethylene responsive element binding protein signature 217 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1553 569 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1553 569 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 363 - -
Cam10g1553 569 MobiDBLite consensus disorder prediction 332 352 - -
Cam10g1553 569 MobiDBLite consensus disorder prediction 542 569 - -
Cam10g1553 569 FunFam AP2-like ethylene-responsive transcription factor 171 237 - -
Cam10g1553 569 Pfam AP2 domain 173 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1553 Cam-Chr10:29198638 Cam11g0921 Cam-Chr11:13512729 1.00E-42 dispersed
Cam10g1553 Cam-Chr10:29198638 Cam05g2410 Cam-Chr5:32098728 1.80E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52765 PF00847 AP2 1.00E-09 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1553 K09285 - csv:101206434 726.857