Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1558 ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAGACCCCGACTCCGCCACTGCCACCGTCACCGCCCCGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAATGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCAGTCAGTCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGATCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCGATTCAGAACTCACAGCCATCCCAAGTCGGAGCGTTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA 696 53.16 MADADQFPRRKPLGNKRASAANRDPDSATATVTAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAIQNSQPSQVGALQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29261220 29263434 - CaPI482276_10g015580.1 Cam10g1558 138221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1558 231 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Cam10g1558 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 191 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cam10g1558 231 Coils Coil 117 137 - -
Cam10g1558 231 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Cam10g1558 231 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0786 Cam-Chr9:7981934 Cam10g1558 Cam-Chr10:29261220 2.60E-35 dispersed
Cam10g1558 Cam-Chr10:29261220 Cam11g1136 Cam-Chr11:22193914 2.20E-23 dispersed
Cam10g1558 Cam-Chr10:29261220 Cam05g0253 Cam-Chr5:2483260 8.90E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52767 PF03195 LOB 1.50E-37 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1558 - - - 0.0