Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1563 ATGGCGACACAGAAATCAACACCGCAAACTGTTCCGCATATGGATAAAACAGTGGGTTGTGTTTTTTTGGCGAATCGGTTTCAGTCTCCAGAATTCCATTTCCATGTTATTAACAAAAGCTCGAGAAGAATCCACGGCAACCCTCAGGAAGATTGCCAGAGTTTTCTTCGTTTAACTGAGTTTGAAGCTAAGTGCTATGTTCTTAAATCCAACAACCCCTGTAACACCCAAGGGTACATAGATTATCTTTACATTTTCTATTGTCAGTATGGAAGTTTTAGCATCCTGGGCTACACTCTGTTGTTTCTGTGGCTTCTTGTGTTGTTCTATCTTTTGGGTAACACTGCTTCTGAATACTTTTGCTCTTCCCTTGAGAGCTTGTCAAAATTGTTGAATCTATCCCCAACAATTGCTGGTGTTACTCTGCTTTCTCTTGGCAATGGGGCACCTGATGTTTTTGCCAGCCTTGTTGCTTTCATGGGGGATGGAACTAGTGATATTGGCTTGAATACTGTTCTCGGCGGAGCCTCGTTTGTTACCTGCGTCGTCGTTGGAATCATTAGCATTTTGCTGCGTCGGCAATGGATTAAGGTGAATAGGTCTGCCTTCATTCGAGATGTTTTGTTCTTCCTCTTGGTTCTTTTGTCTGTTTTCCTGATATTGCTTCATGGTCATATCAATCTGTGGGGTTCCATTGGCTTTTCTTCCATGTATATTATCTATGTTTTGGTTGTTTATGTCTCCCATGCCCAATGGTTGAGTTTTAGAAGTGAAATCTGTGAACCCCTTTTGAAAGAACCACCAAAGGATGAGTTTGAGGGTCGAAATGAACCACGGGACAATGGTGACGATGATGACAACAATGATGATGTTAGAATTGATGTATATGATCTCTGTTTTTGTCCAAGATTATCACCTTCTTGTCTTTTTTTCCTTCGGATTCTTGAGATTCCTCTTTACTTGCCTAGAAGATTGACAATTCCAGCCATTGCTGAAGAAAACTGGTCTAGACCATTTGCTGTTGCTTCAGTGACATTGGCCCCCCTTCTCTTATCTCTTCTATGGACATTTCACGACCAGAGTGATCAACCGTCACAATCGAACCTTATCATCTGTGTCATCGCTTCGTTGCTTGGAGTTAGTTTTGGAATTGTTGCATTTGCAACGACTGAGAATTCAAGCCCACCAAAGAAGTGCCTGTTCCCTTGGCTTGCAGCTGGCTTCACCATGAGTTTAACATGGAGTTACATTGTAGCTCAGGAACTGGTAGGCCTATTAGTTTCACTTGGCTACATAATGGGTATAAGCCCTTCAATCCTAGGACTTACCTTCCTTGCTTGGGGAAACTCTCTAGGGGATTTGGTTACCAATGTGACCATGGCTTTGAACGGCGGGCAGCGAGGCGCCCAAATCGCCATCTCCGGTTGCTACGCTGGCCCCATCTTCAACACTCTGTTCGGCCTTGGGATATCTCTTGTTGGCGCTTCGTGGAAGAAGTATCCGCAGCCGGTCGCCATCCCTCCCGACCCTTATGTCATGGAGACATTGGGGCTGTTGGTAGGAGGGTTGCTTTGGGCACTTGTGGCTTTGCCAAGGAGAGAGATGAGGCTTGATGCTGTCTTGGGAGGAGGCCTTCTGGCTATCTATTTAACCTCTTTGCTCTTAAGGCTTTTGCAAGCTTTTGGTTCTTCCCATTAG 1698 44.58 MATQKSTPQTVPHMDKTVGCVFLANRFQSPEFHFHVINKSSRRIHGNPQEDCQSFLRLTEFEAKCYVLKSNNPCNTQGYIDYLYIFYCQYGSFSILGYTLLFLWLLVLFYLLGNTASEYFCSSLESLSKLLNLSPTIAGVTLLSLGNGAPDVFASLVAFMGDGTSDIGLNTVLGGASFVTCVVVGIISILLRRQWIKVNRSAFIRDVLFFLLVLLSVFLILLHGHINLWGSIGFSSMYIIYVLVVYVSHAQWLSFRSEICEPLLKEPPKDEFEGRNEPRDNGDDDDNNDDVRIDVYDLCFCPRLSPSCLFFLRILEIPLYLPRRLTIPAIAEENWSRPFAVASVTLAPLLLSLLWTFHDQSDQPSQSNLIICVIASLLGVSFGIVAFATTENSSPPKKCLFPWLAAGFTMSLTWSYIVAQELVGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVTNVTMALNGGQRGAQIAISGCYAGPIFNTLFGLGISLVGASWKKYPQPVAIPPDPYVMETLGLLVGGLLWALVALPRREMRLDAVLGGGLLAIYLTSLLLRLLQAFGSSH 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29318423 29320541 - CaPI482276_10g015630.1 Cam10g1563 138226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1563 565 Pfam Sodium/calcium exchanger protein 404 557 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1563 565 Pfam Sodium/calcium exchanger protein 102 246 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1563 565 MobiDBLite consensus disorder prediction 268 286 - -
Cam10g1563 565 MobiDBLite consensus disorder prediction 268 288 - -
Cam10g1563 565 Gene3D - 339 557 IPR044880 -
Cam10g1563 565 Gene3D - 133 259 IPR044880 -
Cam10g1563 565 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 39 563 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1520 Cam-Chr3:30157109 Cam10g1563 Cam-Chr10:29318423 8.30E-113 dispersed
Cam03g1701 Cam-Chr3:32170665 Cam10g1563 Cam-Chr10:29318423 4.80E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1563 K13754 - csv:101204766 928.317