Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1583 ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTCGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCAACGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATAGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAGGAAGAGCTTGAGTTTGAGATGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA 672 42.86 MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLIEDQNQEEEETTATEIELESVEKEEEEELEFEMSKKRKGGVDEESVETERRRRRRRFDNNGVATVI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29562291 29563568 - CaPI482276_10g015830.1 Cam10g1583 138246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1583 223 MobiDBLite consensus disorder prediction 186 216 - -
Cam10g1583 223 MobiDBLite consensus disorder prediction 164 185 - -
Cam10g1583 223 Pfam Response regulator receiver domain 74 142 IPR001789 GO:0000160(InterPro)
Cam10g1583 223 SMART REC_2 9 148 IPR001789 GO:0000160(InterPro)
Cam10g1583 223 MobiDBLite consensus disorder prediction 160 223 - -
Cam10g1583 223 Gene3D - 10 221 - -
Cam10g1583 223 CDD REC_typeA_ARR 11 148 - -
Cam10g1583 223 Coils Coil 161 181 - -
Cam10g1583 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 209 IPR045279 GO:0009736(InterPro)
Cam10g1583 223 SUPERFAMILY CheY-like 8 163 IPR011006 -
Cam10g1583 223 ProSiteProfiles Response regulatory domain profile. 10 153 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0440 Cam-Chr4:16531354 Cam10g1583 Cam-Chr10:29562291 4.20E-55 dispersed
Cam05g2876 Cam-Chr5:35752053 Cam10g1583 Cam-Chr10:29562291 1.30E-50 dispersed
Cam06g1813 Cam-Chr6:29205961 Cam10g1583 Cam-Chr10:29562291 2.30E-38 dispersed
Cam07g0526 Cam-Chr7:7670226 Cam10g1583 Cam-Chr10:29562291 5.10E-40 dispersed
Cam08g1013 Cam-Chr8:16351858 Cam10g1583 Cam-Chr10:29562291 3.60E-39 dispersed
Cam10g1583 Cam-Chr10:29562291 Cam05g2692 Cam-Chr5:34318970 4.20E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52770 PF00072 Response_reg 2.50E-13 CL0304 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1583 K14492 - csv:101220810 313.538