Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1600 ATGAGGAAAGAGGGAGGGTTTATGAAGAAAATGGGAAAGTCAATATGGTTCAAAGTTTTGGTGGGTTTTTTTGGTTTTGAGCTCATCGATGAGTTGGAAGCTGGGGAGTTGATAGCTGAAGTTTTGATAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCAACTCTGAACAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACACTGCCATTACAGAAAGAGTCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTCGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGTTAGAGTTACCTTCTCGTAATGCCCGCCTACTTTTGCCACCTTTGAGCTCCACTCAGTCCTCCTCAGATGGTGACACCTCTGACTGTAGGTTCTTTCAAATTTTGGAAAGGCAGCGGGAAAGATTCTTTGAGTTTTCCATGGAACAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAATGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1671 44.34 MRKEGGFMKKMGKSIWFKVLVGFFGFELIDELEAGELIAEVLITVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFHIEDVDLTRNPLYNQIKSSSSTLNNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLELPSRNARLLLPPLSSTQSSSDGDTSDCRFFQILERQRERFFEFSMEQLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29807816 29816237 + CaPI482276_10g016000.1 Cam10g1600 138263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1600 556 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1600 556 FunFam BZIP family transcription factor 221 270 - -
Cam10g1600 556 CDD bZIP_HBP1b-like 222 273 - -
Cam10g1600 556 PANTHER TRANSCRIPTION FACTOR TGA9 180 556 - -
Cam10g1600 556 MobiDBLite consensus disorder prediction 149 183 - -
Cam10g1600 556 Gene3D - 221 273 - -
Cam10g1600 556 SUPERFAMILY Leucine zipper domain 222 265 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1600 556 Coils Coil 241 268 - -
Cam10g1600 556 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1600 556 MobiDBLite consensus disorder prediction 184 199 - -
Cam10g1600 556 Pfam bZIP transcription factor 221 262 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1600 556 ProSiteProfiles DOG1 domain profile. 287 553 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam10g1600 556 Pfam Seed dormancy control 305 377 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam10g1600 556 SMART brlzneu 218 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1600 556 MobiDBLite consensus disorder prediction 149 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1522 Cam-Chr8:21424077 Cam10g1600 Cam-Chr10:29807816 5.20E-127 dispersed
Cam10g1600 Cam-Chr10:29807816 Cam10g1699 Cam-Chr10:30999001 2.10E-80 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52771 PF14144 DOG1 1.00E-28 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1600 K14431 - csv:101219149 827.78