Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1612 ATGGGATTCTTAGAATGTCTTGGCCATTTCTTTCAAAATGCAAATCCTTACATCGCAGTCATCTCCCTCCAGTTCGGCTATGCCGGAATGAATATCATCTCCACCGTCTCCCTCAACCGGGGTATGAGCCACTATGTCCTCGTTGTCTACCGCCATGCCTTTGCCACCGCCGTCATGGCACCCTTTGCTCTTGTTCTCGAGAGGAAAGTAAGACCCAAGATTACATTTAAGATTTTCATTCAGATGTTTGTTCTTGCTCTACTTGGGCCACTGATTGATCAAAACTTCTACTATGTGGGGCTGAAAATGACATCCCCAACTTTCTCTTGTGCCATAAGCAACATGCTTCCTTCAATGACATTTGTGATGGCAGTCATTTGCAGGATGGAGAAGTTGGATTTGAAAAGAGTGAGATGCCAAGCAAAGTTGTTTGGAACAGTAATGACGGTAGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAAATTCTTCTGGACCGGGCACGGCCACCAACCGCACGCACCACCTACTGCAGATGCGGCAGCACTCAACCACCACAACGACGGAGAGTTCATCAAAGGCTCAATCTTGCTCATCATCGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTCATAACTTTGAGAAAATACACCGCTCATCTTTCTCTCACCACTTTGGTTTGCTTTTTGGGAACCCTTCAGGCCATTGTTGTCACCCTTGCTATGGAGCACCACCCCTCTGCTTGGGCTATCGGCTGGGACTTGAACCTTCTTGCCGCCGCATATGCAGGGATTGTGACTTCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAGGGGCCAGTTTTTGTAACAGCTTTTAGCCCTTTGATGATGGTGATTGTTGCTTTCATGGGATCTCTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTGTTGATTGTGATAGGGTTGTACTCTGTTTTGTGGGGAAAGTACAAGGAAAGCAAAGAGAAAGAAGTTGAAGAGATTGTTGAATTAGCAATGAAAGGTGGAGATCAATTGCCTGTAATAAATGAAGGCATTGAAACAATTCAAAAGAAAGAGGGTTTGGCCATTACCATTCCACCCCAAGCTCATGGAGAAGAGGCTTCAAGACACTAA 1179 45.46 MGFLECLGHFFQNANPYIAVISLQFGYAGMNIISTVSLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITFKIFIQMFVLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRMEKLDLKRVRCQAKLFGTVMTVVGAMLMTFYKGSVIKFFWTGHGHQPHAPPTADAAALNHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLAMEHHPSAWAIGWDLNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSLILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKEVEEIVELAMKGGDQLPVINEGIETIQKKEGLAITIPPQAHGEEASRH 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29909522 29911706 - CaPI482276_10g016120.1 Cam10g1612 138275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1612 392 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020(InterPro)
Cam10g1612 392 Pfam EamA-like transporter family 20 157 IPR000620 GO:0016020(InterPro)
Cam10g1612 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Cam10g1612 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 338 - -
Cam10g1612 392 PANTHER WAT1-RELATED PROTEIN 18 346 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1534 Cam-Chr2:28309157 Cam10g1612 Cam-Chr10:29909522 8.00E-68 dispersed
Cam06g1129 Cam-Chr6:21018517 Cam10g1612 Cam-Chr10:29909522 7.00E-59 dispersed
Cam08g0993 Cam-Chr8:16062190 Cam10g1612 Cam-Chr10:29909522 7.40E-93 dispersed
Cam08g1139 Cam-Chr8:17730145 Cam10g1612 Cam-Chr10:29909522 1.30E-59 dispersed
Cam08g1936 Cam-Chr8:25300672 Cam10g1612 Cam-Chr10:29909522 1.40E-62 dispersed
Cam09g2053 Cam-Chr9:35103278 Cam10g1612 Cam-Chr10:29909522 5.50E-66 dispersed
Cam10g1612 Cam-Chr10:29909522 Cam11g1590 Cam-Chr11:28644389 2.80E-95 dispersed
Cam10g1611 Cam-Chr10:29904468 Cam10g1612 Cam-Chr10:29909522 7.50E-20 tandem
Cam11g1347 Cam-Chr11:26181227 Cam10g1612 Cam-Chr10:29909522 7.60E-128 transposed
Cam10g1612 Cam-Chr10:29909522 Cam04g0584 Cam-Chr4:19635777 7.50E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1612 - - - 0.0