Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1619 ATGAGGGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAACAACTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACAAACTCAAATCCTCCCATTAATAACAATTCTCATCCACCGCCGCCTCCGCCGCCGCCTCCGGTTCTCACTCAGCCGAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCTGGCGCTGGCGACGAACCTGCCAGAACACTGAAACGGCCGCGGCTTGTCTGGACTCCGCAGCTTCATAAGCGATTCGTTGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAGTGCCGGTGGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCGGCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCATCGGAGCTCTGCAGCATCACCACCACCAGATGGCCGCCGCCGCTCAGTACCACCGGCAAGTGACTCAGTTTGGGTCGCCGCCGAATGGGCAATTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTCCGGCGACGAATTATAGCGAGGATTTAGATACGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 852 51.76 MREDDSNWFSKWEQQLPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPPPPPPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASAGGGLPSAASDPATDHLFASSPVPAHFLHSARGNSDHFLPFVPIGALQHHHHQMAAAAQYHRQVTQFGSPPNGQFEHPFLARPVHRIGAPVSTPATNYSEDLDTGNGTGGRKVLTLFPTGND 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29973574 29974425 + CaPI482276_10g016190.1 Cam10g1619 138282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1619 283 FunFam Two-component response regulator 87 150 - -
Cam10g1619 283 MobiDBLite consensus disorder prediction 37 90 - -
Cam10g1619 283 Gene3D - 88 150 - -
Cam10g1619 283 MobiDBLite consensus disorder prediction 252 272 - -
Cam10g1619 283 MobiDBLite consensus disorder prediction 48 65 - -
Cam10g1619 283 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 231 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1619 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Cam10g1619 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677(InterPro)
Cam10g1619 283 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Cam10g1619 283 MobiDBLite consensus disorder prediction 10 24 - -
Cam10g1619 283 MobiDBLite consensus disorder prediction 1 24 - -
Cam10g1619 283 Pfam Myb-like DNA-binding domain 94 143 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0542 Cam-Chr9:5449780 Cam10g1619 Cam-Chr10:29973574 6.00E-11 dispersed
Cam10g1619 Cam-Chr10:29973574 Cam11g0360 Cam-Chr11:5114880 2.70E-15 dispersed
Cam10g1619 Cam-Chr10:29973574 Cam04g0579 Cam-Chr4:19485636 4.30E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52773 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1619 - - - 0.0