Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1676 ATGGGTGCGGTTAAATTATTTCCAAGGCTTCCACTTCCTCTGAGCACCCTCATAATTTCTCACTCTCCAGAGTCAAACACTCTCTTCCAAGCTCTAGATCGATCTCTCTCGCTCCTTGAATCATCATTGACTTCCATTTTCTCCCTAATTTTTGCTCGCATTTCTCTCAATGAAGGAAGCATGTTTTGTGCCATGAATAACTTAACTGTGGAGACGGAAGATGTCTTTTCCAGCTTGCTTGAGCTTGCTGCGAATGATGACATTGATGCCTTCAAGAGATCAATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGTTTATGGTATGGCCGCTTACGTGGCTCGAAGCAAATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAATCGTGCCGTCGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGACCCTAATATGGTTGATGGGAATGGACATCGACCTGTCGATGTGATCGTTGCGCCCTTAAGGCATGGCGAGCTTAAATCAACACTTACAGAACTTCTTAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCGCATTCTCCTCGCCCTTCATCTCCTCTGAATGTCCCCTCATCAGCATCAGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAGTGAGTTTCCAATGTTTTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGCGAATATGCTCATGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGAAGAGTCTGCTTTTTTGCACACACCACTGAGGAACTGCGCCCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGCACTTCCGGGGCTTCTGCCATGGATTATGCTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCCGTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTCTGAGTGCAAGAGACATGCCTGTAGAGGATTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTGCTTAACGACTTGAATTGTCTTTCTCAACCACCGTTGAGTTCAAATTCATTGAACCGTTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAACAACAGACTATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCGTCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCAGTCGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAGTTTCGCAGCCTCAGCTCGCGTGAACTTGGTGCCAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCAAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAGCTTCGGCGATCATCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCGCAAATGGAGGCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCGCAACAGAACTGA 2301 46.2 MGAVKLFPRLPLPLSTLIISHSPESNTLFQALDRSLSLLESSLTSIFSLIFARISLNEGSMFCAMNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGNGHRPVDVIVAPLRHGELKSTLTELLKTNGLSGDGNLDVLTGARNSHSPRPSSPLNVPSSASELVSSPTKSKLSEFPMFSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYATVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQTMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNMNSQMEAVDHAALGAWLEQMQLDHLVAQQN 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30768265 30772279 + CaPI482276_10g016760.1 Cam10g1676 138339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1676 766 Gene3D - 336 399 - -
Cam10g1676 766 ProSiteProfiles Ankyrin repeat region circular profile. 156 190 - -
Cam10g1676 766 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 361 IPR000571 GO:0046872(InterPro)
Cam10g1676 766 ProSiteProfiles Zinc finger C3H1-type profile. 341 363 IPR000571 GO:0046872(InterPro)
Cam10g1676 766 PANTHER UNKEMPT FAMILY MEMBER 115 711 IPR045234 -
Cam10g1676 766 SUPERFAMILY Ankyrin repeat 70 201 IPR036770 -
Cam10g1676 766 Gene3D - 73 215 IPR036770 -
Cam10g1676 766 MobiDBLite consensus disorder prediction 230 259 - -
Cam10g1676 766 MobiDBLite consensus disorder prediction 711 735 - -
Cam10g1676 766 Pfam Ankyrin repeats (3 copies) 118 190 IPR002110 GO:0005515(InterPro)
Cam10g1676 766 FunFam Zinc finger CCCH domain-containing protein 66 294 362 - -
Cam10g1676 766 SMART c3hfinal6 336 362 IPR000571 GO:0046872(InterPro)
Cam10g1676 766 SMART c3hfinal6 371 394 IPR000571 GO:0046872(InterPro)
Cam10g1676 766 ProSiteProfiles Ankyrin repeat profile. 156 191 IPR002110 GO:0005515(InterPro)
Cam10g1676 766 SMART ANK_2a 156 188 IPR002110 GO:0005515(InterPro)
Cam10g1676 766 SMART ANK_2a 121 151 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2020 Cam-Chr2:33213292 Cam10g1676 Cam-Chr10:30768265 1.60E-133 dispersed
Cam07g1718 Cam-Chr7:31919231 Cam10g1676 Cam-Chr10:30768265 3.20E-45 dispersed
Cam10g1442 Cam-Chr10:28090514 Cam10g1676 Cam-Chr10:30768265 1.30E-252 dispersed
Cam10g1676 Cam-Chr10:30768265 Cam11g0200 Cam-Chr11:3522594 1.40E-50 dispersed
Cam10g1676 Cam-Chr10:30768265 Cam07g0436 Cam-Chr7:6015143 2.30E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52780 PF12796 Ank_2 2.20E-09 CL0465 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1676 - - - 0.0