Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1689 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACCACTACCAATTTCCCCCACCACCACCACCACCCTTCTTCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCCCACTTTCCACCACCACCACCACCCTCCGCCGCCATCCTCTCCACCGCTCCGCCAAGCTCTCCCTCTCCTTAGCCTTAGCCCCACACGATCATCACAAGAGAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGATCAAGAATTAGAAGAAGAAGAAGAATTAGAAGATCAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAGGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAACGCTAATAACAATAATTCTGATCAACATCGTCGTCATCATCATCGGCATCATCGTCTTCATGGGTTCGATGAAGAGGATGATCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1077 42.71 MDDPSTNFFFTNLFKFNSPTTTNFPHHHHHPSSSSSSSNPFPPPPPPPPPNFFPTFHHHHHPPPPSSPPLRQALPLLSLSPTRSSQEKNNKEEEKEETLMRVALHIGLPSPRAEEEEGEEEEEEEDQELEEEEELEDQEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNANNNNSDQHRRHHHRHHRLHGFDEEDDHAYSEVEQDHD 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30892563 30895235 + CaPI482276_10g016890.1 Cam10g1689 138352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1689 358 MobiDBLite consensus disorder prediction 114 144 - -
Cam10g1689 358 Coils Coil 112 145 - -
Cam10g1689 358 MobiDBLite consensus disorder prediction 311 358 - -
Cam10g1689 358 PANTHER ZINC FINGER PROTEIN WIP2 24 331 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cam10g1689 358 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Cam10g1689 358 FunFam zinc finger protein WIP2-like 175 198 - -
Cam10g1689 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 203 IPR013087 -
Cam10g1689 358 MobiDBLite consensus disorder prediction 106 145 - -
Cam10g1689 358 SMART c2h2final6 260 280 IPR013087 -
Cam10g1689 358 SMART c2h2final6 176 198 IPR013087 -
Cam10g1689 358 MobiDBLite consensus disorder prediction 339 358 - -
Cam10g1689 358 Gene3D Classic Zinc Finger 221 307 - -
Cam10g1689 358 MobiDBLite consensus disorder prediction 37 71 - -
Cam10g1689 358 FunFam Zinc finger protein WIP2 229 311 - -
Cam10g1689 358 Gene3D Classic Zinc Finger 175 198 - -
Cam10g1689 358 MobiDBLite consensus disorder prediction 23 73 - -
Cam10g1689 358 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 259 283 - -
Cam10g1689 358 SUPERFAMILY beta-beta-alpha zinc fingers 172 198 IPR036236 -
Cam10g1689 358 SUPERFAMILY beta-beta-alpha zinc fingers 242 280 IPR036236 -
Cam10g1689 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 280 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1001 Cam-Chr3:16577451 Cam10g1689 Cam-Chr10:30892563 9.20E-85 dispersed
Cam04g0087 Cam-Chr4:2650758 Cam10g1689 Cam-Chr10:30892563 2.20E-101 dispersed
Cam09g0416 Cam-Chr9:4516032 Cam10g1689 Cam-Chr10:30892563 7.50E-88 dispersed
Cam10g1689 Cam-Chr10:30892563 Cam02g2408 Cam-Chr2:36548527 7.40E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52783 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1689 - - - 0.0