Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1699 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACAACTTCTTCTTCATCATCAACAACAACAACCTCAACTTTTACAAACTCCAAGCTTTGTCATCTCATCAAACTCAAAAAATTCCTCATTATTCAACTTCCAAAACCCCAATTTTCCTGATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCCATCTCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAGTTTGGGCATGAGACCTCCGACTTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATAGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAGAGAGTTGGCCAACCAACGCAGCAGCAATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACTACAACAACCGAACCTCATCCCAAACCTCCCAAACGTGAGCCCAACAAAAAAGGACTAACCTCAAGCTCAGAACAAGAAGGACCCAAAACCCCAGACCCCAAGACCTTAAGAAGATTGGCTCAAAATCGAGAGGCCGCTAGAAAGAGCAGACTTAGAAAAAAGGCGTATGTTCAGCAGTTAGAGATGAGTAGGATTAAGCTCACCCAGCTGGAGCAAGAACTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGTTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATGGACGGTGGCAAGAGGAGCACCACCGGCTAATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCAGCTACCGGAGAACGAGTTGCGGTTGTTCGTGGACAGCTGCCTGGCCCATTACGACGAGGTTCTGAACTTGAAGATGATGGTGGCTAAGTCGGACGTGTTCCACCTTGTCTCCGGCATGTGGAAAACGCCGGCGGAGAGATGCTTCATGTGGATGGGAGATTTTAGGCCCTCCGAACTCATTAAGATAATAATGGGTCAACTAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCCACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGATTCACCGATTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCCTATGGTTGGCTCGTCCAAGGCAAGATTAA 1542 45.72 MASSNIKSTSIIQQANQQEEEKQQQQLLLHHQQQQPQLLQTPSFVISSNSKNSSLFNFQNPNFPDHHHHHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPLPIKGNTALINHSDSKIKASEPSRELANQRSSNGATASGPPPTQTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEQLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQLEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTIHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30999001 31006840 - CaPI482276_10g016990.1 Cam10g1699 138362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1699 513 MobiDBLite consensus disorder prediction 166 186 - -
Cam10g1699 513 Pfam Basic region leucine zipper 218 262 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1699 513 MobiDBLite consensus disorder prediction 108 129 - -
Cam10g1699 513 Pfam Seed dormancy control 313 387 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam10g1699 513 SUPERFAMILY Leucine zipper domain 221 263 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1699 513 MobiDBLite consensus disorder prediction 1 34 - -
Cam10g1699 513 ProSiteProfiles DOG1 domain profile. 295 509 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam10g1699 513 Gene3D - 220 270 - -
Cam10g1699 513 Coils Coil 15 35 - -
Cam10g1699 513 CDD bZIP_HBP1b-like 221 273 - -
Cam10g1699 513 MobiDBLite consensus disorder prediction 108 224 - -
Cam10g1699 513 PANTHER TRANSCRIPTION FACTOR TGA9 129 512 - -
Cam10g1699 513 Coils Coil 240 267 - -
Cam10g1699 513 SMART brlzneu 217 297 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1699 513 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 219 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1699 513 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 224 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1699 513 FunFam BZIP family transcription factor 220 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2288 Cam-Chr2:35500058 Cam10g1699 Cam-Chr10:30999001 1.70E-92 dispersed
Cam10g1600 Cam-Chr10:29807816 Cam10g1699 Cam-Chr10:30999001 2.10E-80 dispersed
Cam10g1699 Cam-Chr10:30999001 Cam11g0805 Cam-Chr11:10206026 3.00E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52786 PF14144 DOG1 6.10E-31 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1699 K14431 - csv:101204923 857.44