Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1702 TTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTAATTGACTTAAACATCCAAGACAATTATTTTAGTGGCATTATTCCAAAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTTCGCCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGCACCTATCGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGGGTGTAGTCAGGCACGAGAAGAAAAGGCTTGGTCCGGGTGGAATTGTTCTCCTGGTTGGAGGGTTAACACTAGTAGTTAGCTTTGCAGCTATCTTTTTCGTATTTTCCATGAAGAAAGTGCATGACAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGAGCAAAGCTGAAGATGGTTCGTCTACTGCAACAGAGGAGAGCTCACAAAGCTTTCCCCTGAGTTCACTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCGAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTGACAGAGCTTCAATCCACTACAAACAAGTTTAGTCAAGAGAATCTTTTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCGGTGAAAAATATCAACATGGGAGAGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATTGTTACACTGCTTGGATATTGTGTAGAGCATGGACAACATATACTCGGATATGAATTTGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCCAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGACGCCTCGTATTTGTGATTGTGGGCTGTCGGTTTTGAGGCCACTTGTGACCAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGTGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAACCGAGGAAGGAGCAATTGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCACGCTTTGTCGATATTATCTCCCTTTGTATACAGTCTGTGAAAGAATTTCGACCGCCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAACGTGCTACAGCGGATGGAACTGAAGTGGATCCTTTTGAGAAATCCTTTCGTTCTACCAATACTGGCTTCCTCCGTGCGTTACTGTATTCCAGTGTCCTTGTCTTCTTGGTAATTCTGACTTCAGTCGTTCAGTGCTTTACTGACCCGTTCGATGTTATAGCTCTTCTCAATCTGTATAGTACCCTAAATTACCCACCTGAGCTTAAAGGATGGAGAACAGATGGTGGGGATCCTTGCGATGGAACGTGGACTGGGGTATTTTGTGTTGGTTCTTCTGTAATAAACCTTAAACTTAATAGACTAAACCTTTCTGGGAATCTTGGAGACCAGCTTTATCTTCTCCATAATTTGAAGCAACTGGATGCTAGTTCCAATTCAATTCTGGGTGAATTTCCTTCTGGCTTACCCCCAAATGTCACTTCTGTGAATCTAAGCCATAATGTCCTATCTGGCCCCATCGGGAATGCTTTTTCTGGCTTACAAAATCTTATGGAGATGGATCTGTCATATAACGATTTCACTGGAGATTTACCAAGTTCATTTGCTTCCTTGACTAATATCAATAGACTGTTCTTGCAGAAAAACAAATTCACAGGATCGGTTTCCTACTTATCTGACCTTCCATTGACTGATTTGAACATCCAAGACAATTACTTTAGTGGCACTATTCCAGAGCATTTCAAGACAATTCCAAATTTATGGATTGGGGGAAATAGGTTCGATGTAAGTAATTCTCCACCCTGGGATTTTTCTGTGGAAACAACACCTTTGACGCGAAACAATAGTAGCTTTCCATTAACAGAACCGATTATCATTGAGAAATGTCCCTACAAGAAAAAGGGGGGGAAAGGAGGGGAAAGATTGGGCCCTGCTGGAATAGCTATAGTGGCTGGTGGAGGTGGTTTTGTAATAATCTTTGCAGCTCTCTTTATTGCAATCTGCAACACACAAATATGTGCAAAGCAAAGGAGCATGAAGCACGTCAACGTGTCTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACCGCACCAGTTGGCAGCCCCCAGATCTTGCCTCTCAGTTCTCCAGACATAGGTGGCGGTCTGAATCATGCATGTCCTACTCGTCATGCTAGAACTGAGAGGGGATGTAGCAGAAGTTTCTCTAAGAGATCCTGGTTCCCAGAAAAAACAAAAACTTACACTGTCACAGAGCTCGAATCCGCTACTAACAAGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCTGATGGCCAAATTTTGGCTGTGAAGAGGGTTGATATGGCGGCACTCTCTTTCACACAAGAACAACAGTTTCTGGATGTGGTCTGCACTGTTTCCCGTTTGAGGCACCCTAACATTGTTAGCCTTCTTGGATACAGTGTAGAGAATGGACAACATTTACTAGCCTATGAGTACGTCAGGAATCTGTCTCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCGTCGAGTGTTCGAATCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCCCCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCATGCTTGATGAAGAATTCATGCCAAAGATTTGTGACTGTGGTTTGTCTGTTTTGAAGCCTCTTGTTAGCAATAGAGTTAAAATCAAGGCTGCTCAAATTGCTTTTGCTGACACTGGCTACTTTGCACCTGAATATGGCCAATCTGGGATTGATCATACCAAAAGTGATGTGTATGCATTCGGAGTGTTGTTTCTGGAGCTTATTACCGCAAAGAAACCAAACGATTTGAGACCAGGGATCGAGCAATCTCTGTCAAGATGGGCATCATTTCAGCTTCTCGACTGTGGGAGTCTAGATGAGATTATTGATCCTGAGATTAAAGGAACATTATCCTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCTGTAATGGAACGTCGGCCACCCATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAAAGAAGGTTCGAGATGGAAAAACGTGCTGCAGCGGAAGGTAAAGTAGTTGACACTTTCGAGAAATCCTTCCACACAACTAACACAGGGATTGTAAGACATCCTAACAAGACTGTCATTGGCATCAATGCTATCAATCGTCGCTTCTGGGTTCGTGCTATGATGGAGGACGCATCAAAGAACGGCGTCCTGGCCGTCCAAACGCTAAGGAACAACATAATGGCGTCTACTCTTCTGGCATCGACGGCGATAATGCTCTGTTCTCTAATCGCCGTCTTAATGACAAGCGGCGGCCACAGCGAATCTCCATTAGTCGTACTCGGCGACAGAAGCCAGTTCAGTTTCTCCATCAAATTTTTCGCCATTTTGCTTTGCTTTCTCGTAGCATTTTTGTTCAATGTTCAATCCATTAGGTATTATAGCCATGCCAGCATTCTGATCAACACGCCTTTCAAGAAAATTGCAATCGACGATCATAACCAACGGCTCACGGCGGAATACGTGGCGGCGACGGTGAACAGAGGCAGCTATTTCTGGTCGTTGGGATTGCGAGCTTTCTACTTCTCGTTTCCTCTGTTTTTGTGGATTTTCGGACCTATTCCTATGTTTTCTTCTTCATTTCTGCTTGTTTTTATGCTTTATTTCCTTGATGCTACTTTTGAATTCTGCTGGACGGATGGGAATTTGGATTACCTTCCTCAAAGAGACGAAGAAGAGGAAATTGGGAAATAG 4311 43.49 FLQNNKFTGSVAYLSRLPLIDLNIQDNYFSGIIPKNFRNIPNLWIGGNRFRPEVNSPPWDFPLEKAPIVQNISGPPTTKSNAIQNYPSRGVVRHEKKRLGPGGIVLLVGGLTLVVSFAAIFFVFSMKKVHDKKINLKIGNMLPRSLPLSKAEDGSSTATEESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLTELQSTTNKFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHILGYEFVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELTPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQLLVKWASSRLHDNESLEQMVDPGIKGTFSSKALSRFVDIISLCIQSVKEFRPPMSEIVEHLTNLQRKMEMVKRATADGTEVDPFEKSFRSTNTGFLRALLYSSVLVFLVILTSVVQCFTDPFDVIALLNLYSTLNYPPELKGWRTDGGDPCDGTWTGVFCVGSSVINLKLNRLNLSGNLGDQLYLLHNLKQLDASSNSILGEFPSGLPPNVTSVNLSHNVLSGPIGNAFSGLQNLMEMDLSYNDFTGDLPSSFASLTNINRLFLQKNKFTGSVSYLSDLPLTDLNIQDNYFSGTIPEHFKTIPNLWIGGNRFDVSNSPPWDFSVETTPLTRNNSSFPLTEPIIIEKCPYKKKGGKGGERLGPAGIAIVAGGGGFVIIFAALFIAICNTQICAKQRSMKHVNVSLPVSKAEDGYSTAPVGSPQILPLSSPDIGGGLNHACPTRHARTERGCSRSFSKRSWFPEKTKTYTVTELESATNKYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMAALSFTQEQQFLDVVCTVSRLRHPNIVSLLGYSVENGQHLLAYEYVRNLSLDDALHSVAHNPLSSSVRIQIAHGVAKALDYLHNAFFPPFAHCNLKAANIMLDEEFMPKICDCGLSVLKPLVSNRVKIKAAQIAFADTGYFAPEYGQSGIDHTKSDVYAFGVLFLELITAKKPNDLRPGIEQSLSRWASFQLLDCGSLDEIIDPEIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRRFEMEKRAAAEGKVVDTFEKSFHTTNTGIVRHPNKTVIGINAINRRFWVRAMMEDASKNGVLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSGGHSESPLVVLGDRSQFSFSIKFFAILLCFLVAFLFNVQSIRYYSHASILINTPFKKIAIDDHNQRLTAEYVAATVNRGSYFWSLGLRAFYFSFPLFLWIFGPIPMFSSSFLLVFMLYFLDATFEFCWTDGNLDYLPQRDEEEEIGK 1436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31046819 31059895 - CaPI482276_10g017020.1 Cam10g1702 138365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1702 1436 MobiDBLite consensus disorder prediction 147 169 - -
Cam10g1702 1436 SUPERFAMILY L domain-like 553 742 - -
Cam10g1702 1436 ProSiteProfiles Protein kinase domain profile. 915 1197 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1702 1436 ProSiteProfiles Protein kinase domain profile. 221 499 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1702 1436 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 552 1194 IPR046959 -
Cam10g1702 1436 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 880 992 - -
Cam10g1702 1436 Gene3D Transferase(Phosphotransferase) domain 1 993 1216 - -
Cam10g1702 1436 Gene3D Transferase(Phosphotransferase) domain 1 299 521 - -
Cam10g1702 1436 SUPERFAMILY Protein kinase-like (PK-like) 198 498 IPR011009 -
Cam10g1702 1436 Gene3D Ribonuclease Inhibitor 556 780 IPR032675 -
Cam10g1702 1436 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 993 1204 - -
Cam10g1702 1436 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 647 758 - -
Cam10g1702 1436 FunFam Leucine-rich repeat receptor-like protein kinase 299 508 - -
Cam10g1702 1436 Pfam Leucine rich repeat 645 705 IPR001611 GO:0005515(InterPro)
Cam10g1702 1436 Pfam Leucine rich repeat N-terminal domain 559 596 IPR013210 -
Cam10g1702 1436 Pfam Protein of unknown function, DUF599 1223 1413 IPR006747 -
Cam10g1702 1436 Gene3D Phosphorylase Kinase; domain 1 184 298 - -
Cam10g1702 1436 Gene3D Phosphorylase Kinase; domain 1 877 992 - -
Cam10g1702 1436 MobiDBLite consensus disorder prediction 150 169 - -
Cam10g1702 1436 Pfam Protein kinase domain 222 496 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1702 1436 Pfam Protein kinase domain 915 1184 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1702 1436 SUPERFAMILY Protein kinase-like (PK-like) 892 1190 IPR011009 -
Cam10g1702 1436 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 186 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1702 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1111 Cam-Chr4:25243213 Cam10g1702 Cam-Chr10:31046819 5.80E-45 dispersed
Cam06g1594 Cam-Chr6:27414466 Cam10g1702 Cam-Chr10:31046819 5.20E-35 dispersed
Cam07g1140 Cam-Chr7:25833262 Cam10g1702 Cam-Chr10:31046819 3.20E-84 dispersed
Cam10g1702 Cam-Chr10:31046819 Cam08g0876 Cam-Chr8:12847818 8.40E-57 dispersed
Cam10g1702 Cam-Chr10:31046819 Cam09g0143 Cam-Chr9:2246534 9.90E-90 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam01g0991 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam07g1140 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.1 1.0e-204 710.3
Cam09g0143 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 1.3e-186 650.2
Cam08g0918 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.1 4.9e-154 542.0
Cam01g0991 . 17 689 Strubbelig Receptor Gene Family AT1G53730 50.9 3.4e-147 519.2
Cam07g1140 . 11 714 Strubbelig Receptor Gene Family AT3G14350 56.7 4.8e-183 638.3
Cam09g0143 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.6e-167 586.6
Cam01g0991 . 138 711 Strubbelig Receptor Gene Family AT4G22130 63.0 1.3e-178 623.2
Cam07g1140 . 398 724 Strubbelig Receptor Gene Family AT4G22130 64.1 2.7e-120 429.5
Cam09g0143 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 6.3e-117 418.3
Cam02g0136 . 484 789 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cam08g0918 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cam01g2335 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85510 PF00069 Pkinase 4.90E-34 CL0016 Cam PK