Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1717 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACTCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTTATGGGGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCAGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGGCTTGCTCAAGAGAATGGAAATATAACTGAAGATATCCTTCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAGCCAACAATTGCAGCTATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCATAATGCAAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATCGTTGTTATGAAGCACGGAGTCTGGCGTATTAAAGGCATTATTCAGGTTTCCAGATCGATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTTGATCCATCCTTTCCACGGTTCCACCTTGCGGAGCCTCTTCGACGGCCTGTTCTTACTGCAGAACCATCGTTAAGTACAAGAGTTCTACAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTATGGGAGCATCTAACAAATCAACAAGCTGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTTGTTAAAACAGCGCTAACTGAGGCTGCAAGGAAGAGGGAAATGAGATATGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTTTTTCATGATGATATCACAGTTGTTGTCATCTTTCTGGACTATGAGTTGCAAGGGAAGAAGGCACGTGTGCCAGAATTATCTGTTCGTGGGTTTACTGATACCGTTGGACCGTCAAATTTCAATGTTCTTCGAGGCATTGATGAGAATGGAAGATTTGTTGATATTGGTTGTAAAATTGAGTTTGATGTACCATCTTTCTTTCCTGATGTTTGA 1221 42.92 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEDILRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDYELQGKKARVPELSVRGFTDTVGPSNFNVLRGIDENGRFVDIGCKIEFDVPSFFPDV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31207299 31210528 + CaPI482276_10g017170.1 Cam10g1717 138380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1717 406 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam10g1717 406 SMART PP2C_4 43 346 IPR001932 -
Cam10g1717 406 Pfam Protein phosphatase 2C 69 317 IPR001932 -
Cam10g1717 406 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Cam10g1717 406 Gene3D - 28 358 IPR036457 -
Cam10g1717 406 CDD PP2Cc 47 348 IPR001932 -
Cam10g1717 406 SUPERFAMILY PP2C-like 53 349 IPR036457 -
Cam10g1717 406 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Cam10g1717 406 FunFam Probable protein phosphatase 2C 42 40 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0702 Cam-Chr2:8315160 Cam10g1717 Cam-Chr10:31207299 8.60E-118 dispersed
Cam10g1717 Cam-Chr10:31207299 Cam10g2036 Cam-Chr10:34200090 2.80E-106 dispersed
Cam10g1717 Cam-Chr10:31207299 Cam01g2107 Cam-Chr1:34044203 4.10E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1717 K01102 - csv:101222146 759.214