Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1724 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAATTGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACAACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATTCGACGATTAGGATACAGATTTGATGTCAATCGTGATCTAGACCAACCGCCAGAGCCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCATTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGAAGGAGAAGATTGGCTTGA 1290 43.57 MGDEIFDAMNLDLNLGPIPEPLSNSVPIEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEDVIRRLGYRFDVNRDLDQPPEPEPEPDSSHETFGRSPTLLNRILTSRGIRREQISLPPHDDVGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31274480 31275769 + CaPI482276_10g017240.1 Cam10g1724 138387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1724 429 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Cam10g1724 429 SUPERFAMILY RING/U-box 137 194 - -
Cam10g1724 429 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Cam10g1724 429 MobiDBLite consensus disorder prediction 250 274 - -
Cam10g1724 429 MobiDBLite consensus disorder prediction 352 371 - -
Cam10g1724 429 MobiDBLite consensus disorder prediction 250 267 - -
Cam10g1724 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 367 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Cam10g1724 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 196 IPR013083 -
Cam10g1724 429 MobiDBLite consensus disorder prediction 398 418 - -
Cam10g1724 429 CDD RING-HC_AtRMA-like 139 182 - -
Cam10g1724 429 FunFam Zinc finger family protein 122 195 - -
Cam10g1724 429 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 IPR018957 GO:0046872(InterPro)
Cam10g1724 429 MobiDBLite consensus disorder prediction 398 429 - -
Cam10g1724 429 SMART ring_2 141 181 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1661 Cam-Chr1:30196693 Cam10g1724 Cam-Chr10:31274480 3.30E-24 dispersed
Cam05g1409 Cam-Chr5:16497431 Cam10g1724 Cam-Chr10:31274480 2.40E-07 dispersed
Cam10g1409 Cam-Chr10:27750179 Cam10g1724 Cam-Chr10:31274480 4.00E-34 dispersed
Cam10g1724 Cam-Chr10:31274480 Cam11g1835 Cam-Chr11:30886924 1.70E-21 dispersed
Cam10g1724 Cam-Chr10:31274480 Cam08g2009 Cam-Chr8:25826885 1.80E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1724 K10666 - csv:101220497 781.941