Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1725 ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCTCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCTGCTTCTGCTTCCGCTTCCGCTTCCCCTTCCCTTCAAGATGATGAAGAAGAAGATGAAGATGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACCCTCACCATGTGCCCCTCGTGCGAGCGCGTCGCCGCCGCCACCACCACCGCCGCCGCCTCTGTTCCCACCAAAACCGCCACCCCCGCCCCGTCGTCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCATTTGCATCAGGCTGCTTCATGA 1062 46.99 MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASASPSLQDDEEEDEDDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGIKRKRSWEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAAATTTAAASVPTKTATPAPSSALCLANKPKILPFPHLHQAAS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31297265 31299246 + CaPI482276_10g017250.1 Cam10g1725 138388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1725 353 Coils Coil 259 289 - -
Cam10g1725 353 MobiDBLite consensus disorder prediction 63 77 - -
Cam10g1725 353 Pfam Homeobox associated leucine zipper 253 287 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g1725 353 MobiDBLite consensus disorder prediction 178 200 - -
Cam10g1725 353 ProSiteProfiles 'Homeobox' domain profile. 193 253 IPR001356 GO:0003677(InterPro)
Cam10g1725 353 SUPERFAMILY Homeodomain-like 190 254 IPR009057 -
Cam10g1725 353 Gene3D - 201 251 - -
Cam10g1725 353 SMART halz 253 296 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g1725 353 MobiDBLite consensus disorder prediction 51 100 - -
Cam10g1725 353 MobiDBLite consensus disorder prediction 9 32 - -
Cam10g1725 353 FunFam Homeobox-leucine zipper protein HAT22 201 247 - -
Cam10g1725 353 CDD homeodomain 198 254 IPR001356 GO:0003677(InterPro)
Cam10g1725 353 CDD bZIP 246 285 - -
Cam10g1725 353 ProSitePatterns 'Homeobox' domain signature. 228 251 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam10g1725 353 SMART HOX_1 195 257 IPR001356 GO:0003677(InterPro)
Cam10g1725 353 MobiDBLite consensus disorder prediction 178 194 - -
Cam10g1725 353 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 71 325 IPR050762 -
Cam10g1725 353 MobiDBLite consensus disorder prediction 1 32 - -
Cam10g1725 353 Pfam Homeodomain 199 251 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0668 Cam-Chr7:13376876 Cam10g1725 Cam-Chr10:31297265 1.20E-33 dispersed
Cam10g0242 Cam-Chr10:4195991 Cam10g1725 Cam-Chr10:31297265 3.30E-50 dispersed
Cam10g0817 Cam-Chr10:17342588 Cam10g1725 Cam-Chr10:31297265 1.90E-50 dispersed
Cam10g1410 Cam-Chr10:27763539 Cam10g1725 Cam-Chr10:31297265 7.70E-44 dispersed
Cam10g1725 Cam-Chr10:31297265 Cam10g1913 Cam-Chr10:33197246 2.40E-13 dispersed
Cam05g1931 Cam-Chr5:28241392 Cam10g1725 Cam-Chr10:31297265 1.10E-42 transposed
Cam10g1725 Cam-Chr10:31297265 Cam09g0376 Cam-Chr9:4132383 3.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52790 PF00046 Homeodomain 2.30E-15 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1725 K09338 - csv:101222778 461.84