Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1782 ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACCTATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA 498 55.22 MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31897858 31898355 - CaPI482276_10g017820.1 Cam10g1782 138445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1782 165 SMART ring_2 100 141 IPR001841 -
Cam10g1782 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 159 IPR045899 -
Cam10g1782 165 Pfam Ring finger domain 100 142 IPR001841 -
Cam10g1782 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Cam10g1782 165 CDD RING-H2_PA-TM-RING 100 142 - -
Cam10g1782 165 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Cam10g1782 165 SUPERFAMILY RING/U-box 74 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1548 Cam-Chr1:29029853 Cam10g1782 Cam-Chr10:31897858 2.20E-44 dispersed
Cam08g1260 Cam-Chr8:18927758 Cam10g1782 Cam-Chr10:31897858 7.90E-15 dispersed
Cam08g1520 Cam-Chr8:21408286 Cam10g1782 Cam-Chr10:31897858 2.30E-25 dispersed
Cam10g1627 Cam-Chr10:30085983 Cam10g1782 Cam-Chr10:31897858 4.80E-07 dispersed
Cam10g1782 Cam-Chr10:31897858 Cam11g0705 Cam-Chr11:8683472 4.10E-08 dispersed
Cam10g1782 Cam-Chr10:31897858 Cam07g1528 Cam-Chr7:29911863 2.20E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1782 - - - 0.0