Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1787 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCTATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACGGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGACCGATCGGAAATATCTTCCATCCTTGAGATCACTCTTCTGCTTCGCCGGTATCGGAATCCGGCGGGAGAGCACCGGCGACCGGCTAATCCATTGCAGATTCGAGGTCATCTCTCTAACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAACCGCATCTTTCGAGCTCTTCTCTCGCTTTCCTCCACCATGGGAACACTGCGAATGATAGATATTGCAGTCAATTTTACAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATAGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGTGACCGGTGGATCACTTGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAGATGGAAGGCTCTTTTGTACTGTGGGTGTGCATCCAACTAGATGCAAGGAATTTGAAGAGAGTGGTGATCCAGAGACGTATTTTCAGGCTCTTCTTTCATTAACCAAAGAGGGAATTGAGAAAGGAAAGGTTGTTGCAGTTGGTGAATGTGGACTAGATTATGACAGGCTTCACTTTTGCCCTGCTGATATTCAAAAGAAATATTTCGAGAAGCAGTTTGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGAGGGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTCACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAATTTGTACATAGGGATTAATGGTTGCTCTCTGAAAACTACTGAAAATCTTGATGTTGTGAGGGGTATACCAATCGAGAGACTGATGATTGAGACGGACTCTCCATATTGTGAAATCAAGAATACACATGCTGGTATTAAGTTTGTTAAATCGACCTGGGCTTCTAAGAAGAAAGAGAAGCATGATGAGCAGTGCATAGTGAAAGGAAGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACATGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCATGATCTTGATGAAAAAATTTAG 2022 45.15 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMDRSEISSILEITLLLRRYRNPAGEHRRPANPLQIRGHLSNQFEPISSKFKSNRIFRALLSLSSTMGTLRMIDIAVNFTDGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIVTGGSLEESREALKIAETDGRLFCTVGVHPTRCKEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLYIGINGCSLKTTENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSTWASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKI 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31950722 31957829 - CaPI482276_10g017870.1 Cam10g1787 138450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1787 673 ProSitePatterns TatD deoxyribonuclease family signature 3. 562 578 IPR018228 -
Cam10g1787 673 FunFam Putative tatD related deoxyribonuclease 351 657 - -
Cam10g1787 673 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Cam10g1787 673 Pfam SNARE domain 238 286 IPR000727 -
Cam10g1787 673 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 345 661 IPR050891 GO:0005829(PANTHER)|GO:0008296(PANTHER)
Cam10g1787 673 FunFam Syntaxin 132 194 287 - -
Cam10g1787 673 ProSitePatterns TatD deoxyribonuclease family signature 2. 498 508 IPR018228 -
Cam10g1787 673 Gene3D - 198 287 - -
Cam10g1787 673 SMART tSNARE_6 196 263 IPR000727 -
Cam10g1787 673 Gene3D - 346 657 - -
Cam10g1787 673 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Cam10g1787 673 Coils Coil 204 224 - -
Cam10g1787 673 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cam10g1787 673 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Cam10g1787 673 Coils Coil 31 65 - -
Cam10g1787 673 Pfam TatD related DNase 377 650 IPR001130 GO:0016788(InterPro)
Cam10g1787 673 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam10g1787 673 CDD TatD_DNAse 356 651 IPR001130 GO:0016788(InterPro)
Cam10g1787 673 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cam10g1787 673 CDD SNARE_syntaxin1-like 200 262 - -
Cam10g1787 673 Gene3D - 29 161 - -
Cam10g1787 673 Coils Coil 126 150 - -
Cam10g1787 673 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Cam10g1787 673 SUPERFAMILY Metallo-dependent hydrolases 356 651 IPR032466 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1547 Cam-Chr1:29025152 Cam10g1787 Cam-Chr10:31950722 4.30E-112 dispersed
Cam03g0557 Cam-Chr3:6404015 Cam10g1787 Cam-Chr10:31950722 3.20E-91 dispersed
Cam04g0520 Cam-Chr4:18600528 Cam10g1787 Cam-Chr10:31950722 1.10E-59 dispersed
Cam10g1328 Cam-Chr10:26779823 Cam10g1787 Cam-Chr10:31950722 1.80E-64 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1787 K03424 - csv:101209174 640.188