Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1792 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGACGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCAATGGATTTACTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA 1218 49.59 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLLCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMAQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32044687 32045904 - CaPI482276_10g017920.1 Cam10g1792 138455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1792 405 SMART Ubox_2 10 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam10g1792 405 Pfam U-box domain 7 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam10g1792 405 Gene3D - 96 390 IPR011989 -
Cam10g1792 405 SUPERFAMILY RING/U-box 4 85 - -
Cam10g1792 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Cam10g1792 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Cam10g1792 405 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630(InterPro)
Cam10g1792 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam10g1792 405 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Cam10g1792 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1210 Cam-Chr3:24058453 Cam10g1792 Cam-Chr10:32044687 1.90E-78 dispersed
Cam03g1217 Cam-Chr3:24276503 Cam10g1792 Cam-Chr10:32044687 2.20E-74 dispersed
Cam05g0304 Cam-Chr5:2870043 Cam10g1792 Cam-Chr10:32044687 1.10E-52 dispersed
Cam06g0157 Cam-Chr6:3469481 Cam10g1792 Cam-Chr10:32044687 4.70E-38 dispersed
Cam10g1792 Cam-Chr10:32044687 Cam11g1412 Cam-Chr11:26804562 5.70E-11 dispersed
Cam04g0511 Cam-Chr4:18482310 Cam10g1792 Cam-Chr10:32044687 6.90E-116 transposed
Cam05g1176 Cam-Chr5:11025716 Cam10g1792 Cam-Chr10:32044687 1.50E-49 transposed
Cam05g1291 Cam-Chr5:13108991 Cam10g1792 Cam-Chr10:32044687 1.20E-46 transposed
Cam07g0205 Cam-Chr7:3207881 Cam10g1792 Cam-Chr10:32044687 3.00E-06 transposed
Cam07g0563 Cam-Chr7:8461102 Cam10g1792 Cam-Chr10:32044687 1.20E-44 transposed
Cam11g0838 Cam-Chr11:10955164 Cam10g1792 Cam-Chr10:32044687 4.30E-30 transposed
Cam10g1792 Cam-Chr10:32044687 Cam02g2321 Cam-Chr2:35744332 1.50E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1792 - - - 0.0