Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g1832 | ATGCTTAACCCCAAATCCTCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAAGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCGAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG | 813 | 53.87 | MLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGVGGGGGWTRMFCSTNPYPSSHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32433294 | 32436469 | + | CaPI482276_10g018320.1 | Cam10g1832 | 138495 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g1832 | 270 | ProSiteProfiles | B3 DNA-binding domain profile. | 20 | 131 | IPR003340 | GO:0003677(InterPro) | |
Cam10g1832 | 270 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 16 | 210 | IPR044800 | GO:0003700(InterPro) | |
Cam10g1832 | 270 | MobiDBLite | consensus disorder prediction | 214 | 233 | - | - | |
Cam10g1832 | 270 | MobiDBLite | consensus disorder prediction | 164 | 195 | - | - | |
Cam10g1832 | 270 | MobiDBLite | consensus disorder prediction | 217 | 233 | - | - | |
Cam10g1832 | 270 | SUPERFAMILY | DNA-binding pseudobarrel domain | 18 | 131 | IPR015300 | - | |
Cam10g1832 | 270 | SMART | B3_2 | 20 | 131 | IPR003340 | GO:0003677(InterPro) | |
Cam10g1832 | 270 | CDD | B3_DNA | 18 | 120 | IPR003340 | GO:0003677(InterPro) | |
Cam10g1832 | 270 | Gene3D | - | 11 | 139 | IPR015300 | - | |
Cam10g1832 | 270 | Pfam | B3 DNA binding domain | 20 | 130 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g1364 | Cam-Chr6:25088330 | Cam10g1832 | Cam-Chr10:32433294 | 4.50E-25 | dispersed | |
Cam10g1832 | Cam-Chr10:32433294 | Cam07g0833 | Cam-Chr7:20827098 | 1.30E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52800 | PF02362 | B3 | 7.40E-31 | CL0405 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g1832 | K09287 | - | csv:101214938 | 440.269 |