Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1832 ATGCTTAACCCCAAATCCTCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAAGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCGAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 813 53.87 MLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGVGGGGGWTRMFCSTNPYPSSHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32433294 32436469 + CaPI482276_10g018320.1 Cam10g1832 138495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1832 270 ProSiteProfiles B3 DNA-binding domain profile. 20 131 IPR003340 GO:0003677(InterPro)
Cam10g1832 270 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 210 IPR044800 GO:0003700(InterPro)
Cam10g1832 270 MobiDBLite consensus disorder prediction 214 233 - -
Cam10g1832 270 MobiDBLite consensus disorder prediction 164 195 - -
Cam10g1832 270 MobiDBLite consensus disorder prediction 217 233 - -
Cam10g1832 270 SUPERFAMILY DNA-binding pseudobarrel domain 18 131 IPR015300 -
Cam10g1832 270 SMART B3_2 20 131 IPR003340 GO:0003677(InterPro)
Cam10g1832 270 CDD B3_DNA 18 120 IPR003340 GO:0003677(InterPro)
Cam10g1832 270 Gene3D - 11 139 IPR015300 -
Cam10g1832 270 Pfam B3 DNA binding domain 20 130 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1364 Cam-Chr6:25088330 Cam10g1832 Cam-Chr10:32433294 4.50E-25 dispersed
Cam10g1832 Cam-Chr10:32433294 Cam07g0833 Cam-Chr7:20827098 1.30E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52800 PF02362 B3 7.40E-31 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1832 K09287 - csv:101214938 440.269