Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam10g1838 | ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTAACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTTCAAACACGCACCGAGAACATGTAGAAACTTCATTGAGCTTTCCCGGCGAGGTTATTATGACAATGTCAAATTCCACCGGATTATTAAGGATTTTATAGTGCAAGGTGGAGATCCCACAGGAACTGGACGGGGTGGGGAATCTATTTATGGCAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCACACTGGAGCAGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTAGATGGAAAGCACTCTATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATACTACGGGCATCAGTTAAAGACTAA | 495 | 44.24 | MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD | 164 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 32487673 | 32491337 | + | CaPI482276_10g018380.1 | Cam10g1838 | 138501 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam10g1838 | 164 | FunFam | Peptidyl-prolyl cis-trans isomerase | 2 | 164 | - | - | |
| Cam10g1838 | 164 | SUPERFAMILY | Cyclophilin-like | 11 | 162 | IPR029000 | - | |
| Cam10g1838 | 164 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 9 | 159 | IPR044666 | GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER) | |
| Cam10g1838 | 164 | PIRSF | Peptidylpro_ismrse | 3 | 164 | IPR024936 | GO:0003755(InterPro) | |
| Cam10g1838 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 25 | 40 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cam10g1838 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 109 | 121 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cam10g1838 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 51 | 63 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cam10g1838 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 122 | 137 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cam10g1838 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 94 | 109 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cam10g1838 | 164 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 12 | 162 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cam10g1838 | 164 | Gene3D | - | 3 | 164 | IPR029000 | - | |
| Cam10g1838 | 164 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 15 | 162 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Cam10g1838 | 164 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 46 | 63 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g1297 | Cam-Chr1:24527309 | Cam10g1838 | Cam-Chr10:32487673 | 7.90E-44 | dispersed | |
| Cam05g0242 | Cam-Chr5:2387862 | Cam10g1838 | Cam-Chr10:32487673 | 1.30E-41 | dispersed | |
| Cam05g1971 | Cam-Chr5:28578738 | Cam10g1838 | Cam-Chr10:32487673 | 1.20E-38 | dispersed | |
| Cam09g0724 | Cam-Chr9:7284961 | Cam10g1838 | Cam-Chr10:32487673 | 5.40E-29 | dispersed | |
| Cam09g1807 | Cam-Chr9:32423285 | Cam10g1838 | Cam-Chr10:32487673 | 1.30E-30 | dispersed | |
| Cam10g1838 | Cam-Chr10:32487673 | Cam01g1801 | Cam-Chr1:31574558 | 3.90E-43 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam10g1838 | K12733 | - | csv:101222111 | 335.88 |