Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1886 ATGGACTTTGATCTGAAGCAATGTAGAACACAGAGGGAGTCAGAGGAGCAACAACATTCTGCAAAGATTTCTAAGTTGTTTGTTGAACAGACCCATCATCTTTCTTCTTCTTCCACTTCTGTTCTTCCTTTGTTTGTACCTGCTGATTCCAACAACTCCTCCAAAACTTCCAACATCTTGTCAGCATTTCAAGATTCAACTTCTTTTACATTACCCAGGATGCTGGGTTATTTCAGTGTGGCTCAAAGGCAAGAACTTGAACTTCAAGCTCTCATTTTCCGGTATATGTTGGCCGGCGCCGCCGTCCCGCCGGAGCTTCTCCACCCTATTAAGAAAAGCCTTATCTCTTCCTCTTCTACTACTCCTTTCTTTCTTCATCATCCTCTTCAACATTTCCCTCACTATCCCACTTCTTTGTTGCAAGCAGGGTATTGGGGCAGAGCCGCCATGGATCCGGAGCCTGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGCTCAAGAGATGTCGTCGCCGGCCAGAAATACTGTGAGCGCCATATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACTACCACAACTAACCCCTCCACCACCGCCGCCGCTGTTGGCGGCGGTGGCGGCGGTTGTTCTCTCAGTTCCAACTCCAACCGTGTTATTGGTGGCGGTGGTGGTCGGCCTTTTTTGACTGTGGAAAGTGGAAATTATTTCTCTACGTGTGGACAAACCCCATCCGTTGATCTTCTCCATCTCAATCAAGGTTCTTGTTCTAATTCCTTATCAGAGAACAAGAAATTCTATGAATCCCACAAAGAGCCTTCCGCCGGAGATGCTAAATCCGACGGCCACATTTTAAGGCATTTTTTCGACGATTGGCCGCGGTCCGAAAATGGTGGTAGTGGGAATGACAACAACAGTGTCAACCAACGAATGAACTCCACGTCTGCTTCGGCAACATCCCTTTCGATTTCGATGCCTGGGAACCCTCCGTCATCGTCTTCTGACGTGTCGTTGAAATTGTCGACAGGAGGAAGTTCTGATCAAGGCAGTGACCACCATATCCACCAAAATGGCAACGTTGACCGAGAACACGTGCAGTTGAATTGGGCTGCAGGATGGGCCGCCACGCAGATGGCGTCAATGGGCGGACCGCTGGCTGAAGCGCTGCGCTCCGCCAACAACAACTCGTTGCCAACGAGTGTGCTGCATCAGTTGCAAAGAACAACCAACTCGGAAGCTAGCTTTATTAGCACTTGA 1269 49.72 MDFDLKQCRTQRESEEQQHSAKISKLFVEQTHHLSSSSTSVLPLFVPADSNNSSKTSNILSAFQDSTSFTLPRMLGYFSVAQRQELELQALIFRYMLAGAAVPPELLHPIKKSLISSSSTTPFFLHHPLQHFPHYPTSLLQAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETTTTNPSTTAAAVGGGGGGCSLSSNSNRVIGGGGGRPFLTVESGNYFSTCGQTPSVDLLHLNQGSCSNSLSENKKFYESHKEPSAGDAKSDGHILRHFFDDWPRSENGGSGNDNNSVNQRMNSTSASATSLSISMPGNPPSSSSDVSLKLSTGGSSDQGSDHHIHQNGNVDREHVQLNWAAGWAATQMASMGGPLAEALRSANNNSLPTSVLHQLQRTTNSEASFIST 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32929029 32930985 - CaPI482276_10g018860.1 Cam10g1886 138549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1886 422 PANTHER GROWTH-REGULATING FACTOR 5 50 336 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cam10g1886 422 MobiDBLite consensus disorder prediction 293 360 - -
Cam10g1886 422 ProSiteProfiles WRC domain profile. 151 195 IPR014977 -
Cam10g1886 422 ProSiteProfiles QLQ domain profile. 77 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam10g1886 422 Pfam WRC 152 194 IPR014977 -
Cam10g1886 422 SMART QLQ_2 76 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam10g1886 422 MobiDBLite consensus disorder prediction 184 213 - -
Cam10g1886 422 MobiDBLite consensus disorder prediction 301 357 - -
Cam10g1886 422 Pfam QLQ 78 110 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0241 Cam-Chr5:2380766 Cam10g1886 Cam-Chr10:32929029 4.30E-25 dispersed
Cam10g1886 Cam-Chr10:32929029 Cam11g0157 Cam-Chr11:3196545 5.40E-28 dispersed
Cam10g1886 Cam-Chr10:32929029 Cam03g1536 Cam-Chr3:30309457 2.60E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52803 PF08879 WRC 2.70E-22 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1886 - - - 0.0