Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1890 ATGGCTTCTTCCTCCGGCCGCCACCCCGTCTACCGAGGTGTTCGCCGCCGCAACACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTAGGAACTTTCCCGACTGCTGAAATGGCCGCCGTCGCTTACGACGTTGCAGCCCTTGCCCTCAAGGGCCAAGACGCCGAGCTTAATTTCCCTAATTCTGCTTCGTCTCTCCCCGTCCCCGCGTCTAGGTCACCATCTGATATTCAGGCGGCAGCTGCATCGGCCGCCGCTGCGCTTGGAGCGGCTGCGGCGGCCATGGAAGCACGAAATAATAACGGTTCTCGTCGTGGAACTAATTCCGGCGATGTTGTTTATGGAGGAAGATATGGTCAAGACGGATTGGGAAATCAGTTCATGGATGAAGACTTGATTTTTGATATGCCTAATGTTCTAATGAACATGGCCGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATATCCATGGCGGAGACGATGACGGCGACAACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA 549 53.92 MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNSGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNIHGGDDDGDNGADQNLWNFP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32989857 32990405 - CaPI482276_10g018900.1 Cam10g1890 138553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1890 182 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1890 182 Pfam AP2 domain 9 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1890 182 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677(InterPro)
Cam10g1890 182 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1890 182 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1890 182 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1890 182 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1890 182 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam10g1890 182 FunFam Ethylene-responsive transcription factor 2 9 68 - -
Cam10g1890 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 181 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1006 Cam-Chr4:24235507 Cam10g1890 Cam-Chr10:32989857 7.80E-43 dispersed
Cam10g0361 Cam-Chr10:5855238 Cam10g1890 Cam-Chr10:32989857 1.40E-35 dispersed
Cam10g1890 Cam-Chr10:32989857 Cam11g1537 Cam-Chr11:28196751 1.30E-26 dispersed
Cam10g1889 Cam-Chr10:32980969 Cam10g1890 Cam-Chr10:32989857 2.40E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52805 PF00847 AP2 8.70E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1890 - - - 0.0