Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1897 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACCAGGGAACCGGGTTTGAAGAAGCCGCGACTGGCCGATGAGGCTGAACGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGGAACAATATTGTGCAACCACCCAGATTTCGAGCAAGTGATAGGGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAACCTCAGCCACCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACCGCCCTTGCGGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCTCTGCCACCGTTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTATATAAAATACTTTGCAGCAAGACTACCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTGTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATTGAGAAAGAACTTGGGTTCGTGCCTAGCGGTAGTTCTTCTTCTGGGGCCATAACCTCCAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAGCGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTGGTGTGACAACAAATGTAAGTCAGGATGTAGCCCAAGCCAAAATTAATACTGGACGTCCATGGGCAGATGCTCCAATTAAAGTGATTGACATTCAACGTCCCCTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAACATCACGGCTGGATTTGCAGACTACGAATATGGTTCTGATCTTTCAAGGACATCGGGTGTTGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAACAATTTGGCTGAGAAACTATCTGGTCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTTCACGTCTACTGCCCGTGCAAAATTTTTCAAGCAGCAGCAGCAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGATGACAGGTCATGGTGCACCTGCTATCGCTGGTAGCACTGGAAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATGGACAATAAGCCATTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAACAAAGGTCTACGTGGCAACTGCAAGAGTCAATATCTCTGGATGGGCTAAGAGGCGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGTTATAGTGCTACTCTTACTGCACTGTCAGGTGCTAATTCTTCATCTAATATTGGGGCTTCAGGACATGGGTTTCTTAATAAAGGAGGTTCAGGGCCCCTTGGGACTGTAAGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAACCACCCTTGCACCAACGCCCCCCTTCACCATTGTTAGTGGATCATGTTCCTCATCAAATACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGGCATATGCAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAATCTTCAAAAGCCCCTGCCTCATGACCTACAAGCTCCAGCTTCATCCATACCTGCGTCTCAACCTAGGCACCAGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTACACAGTCGGAACTTTCTAGTCAGCATGCAGTATCAATTCCAGGCACCGATATTGGACCATCCTCATCAGCTGGGACAGTTCCAGATCATTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGACTTTTCTCCAACCATTCAATAACCAGTAGCATGCAGCAGAATATCGGCTTCCAAGATGTGGGAAATATGAAACCTCGCTCAAGCATTAAACCTCCTCTACCAAGCCGGTCTTCTCCTGCCCATACATTCGCAGAGCCAAAGATTCGGGGAGAATCCCCAGTAGGTCCTCCATCACTTGAAAGCCCATCAACTATGGTTAAGTTGTCTCGAACTAAGGTAGAAGAACCATCGTTGCCATCTGATCCACTCCCACCTTCATCTCCTATGAACAGTGCATCCACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCAGCTTCAAAAGGAGAATTAACAAATAGTGTGACATCCCAGATGCCTTCACAGCATGAAAATTTGAAGTCAGGTGATGCTGTGGCTAGTTCTGTACCAGTTCCTTCCATCCCTGTTTCCTCTGCCAGTCACTCATCTATGAGACTTGAATCACCTTCAAAAGCTGCTGCTAGGAGCTCTAGTAGTCCACCTCCATCTGCCACAACTGAAATAAAGAACCTCATAGGCTTTGAGTTTAGTTCACACGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGATGATATTCCATACCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACAGTTGGAAACTCACTCACGGTGGCACACATTAAGAGCTGAGGCAAACAATTCTAGTAGCACACCAAGAAGATGGTATCCAAGTTCAAGTGATTGGATTTCTGGAAATGCGAGACTTCTACTTGATGCTGCAACTTCTCTGGACGAGTTCAACATGATGGAAGAAGATAATGAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCCTGTGTTATATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTAATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTAGGATGCACAAATGAACAAGTTGCCAGAGGACCCATTGTGCACACGAATTGTTTGACTGAAAGTTCAGTATATGACGTGGGAGTGGCTACTGATATTAAGATGGAAATGGATGGAGTGGTAGCTCTATACTGCAAAATTTTCACTTAA 3252 45.51 MEMESSRRPFDRTREPGLKKPRLADEAERGGNINGRPFPQRPVVSGNNIVQPPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQIIEKELGFVPSGSSSSGAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGMTSDATGVTTNVSQDVAQAKINTGRPWADAPIKVIDIQRPLRDAPNDMAQEKNITAGFADYEYGSDLSRTSGVGRRVVDEGRDKPWSSAGNNLAEKLSGQRNGFNIKLGYENYPAPKSANTGSRLLPVQNFSSSSSNRVLSTNWKNSEEEEFMWGEMNSMMTGHGAPAIAGSTGKDQWTPEDSDNSGMDNKPLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSTWQLQESISLDGLRGGVPRKNSGQSGGYSATLTALSGANSSSNIGASGHGFLNKGGSGPLGTVSHQRFPSRSVAFPSGQPPLHQRPPSPLLVDHVPHQIHDHKTTSFSNLDPRKRHMQDAALGLHPSVRPDNLQKPLPHDLQAPASSIPASQPRHQFSLSESLKPDVTQSELSSQHAVSIPGTDIGPSSSAGTVPDHLPAEILGEPSTSSLLAAVMKSGLFSNHSITSSMQQNIGFQDVGNMKPRSSIKPPLPSRSSPAHTFAEPKIRGESPVGPPSLESPSTMVKLSRTKVEEPSLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQHENLKSGDAVASSVPVPSIPVSSASHSSMRLESPSKAAARSSSSPPPSATTEIKNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKCEEQLETHSRWHTLRAEANNSSSTPRRWYPSSSDWISGNARLLLDAATSLDEFNMMEEDNEPMVPADEDQFACVICGELFEDFYSQELGNWMFKGAMYITIPSVGSEVGCTNEQVARGPIVHTNCLTESSVYDVGVATDIKMEMDGVVALYCKIFT 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33049815 33056600 - CaPI482276_10g018970.1 Cam10g1897 138560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1897 1083 Pfam CID domain 88 196 IPR006569 -
Cam10g1897 1083 ProSitePatterns Zinc finger C2H2 type domain signature. 919 939 IPR013087 -
Cam10g1897 1083 CDD CID_Pcf11 83 195 IPR047415 -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 411 505 - -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 783 797 - -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 455 485 - -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 1 29 - -
Cam10g1897 1083 FunFam polyadenylation and cleavage factor homolog 4 75 203 - -
Cam10g1897 1083 Gene3D - 73 203 IPR008942 -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 714 797 - -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 622 640 - -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 602 640 - -
Cam10g1897 1083 SMART 558neu5 81 203 IPR006569 -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 1 78 - -
Cam10g1897 1083 ProSiteProfiles Zinc finger C2H2 type domain profile. 917 944 IPR013087 -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 427 443 - -
Cam10g1897 1083 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 1070 IPR045154 GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Cam10g1897 1083 MobiDBLite consensus disorder prediction 850 883 - -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 826 841 - -
Cam10g1897 1083 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 826 883 - -
Cam10g1897 1083 SUPERFAMILY ENTH/VHS domain 78 203 IPR008942 -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 209 229 - -
Cam10g1897 1083 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0287 Cam-Chr3:4004504 Cam10g1897 Cam-Chr10:33049815 1.30E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1897 K14400 - csv:101223169 1849.33