Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1900 ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAAATTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGTTTCGACAACGTTTAAAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGCTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACGGATGGGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGCGATTCGAGAGCACAGATGGCCGAGATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATGAGCTCTGTTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTGTGGACTGTGTGCACCATCCTGCCTGACAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAGGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGATCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGATGCGTTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGCCTGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACACAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCATTGTATTTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAACTCCCAAGACAGGGATTTCCAACTGTATAAACCACGTGATAATTCTCATAATCTTATACAACCAACTGTCCAGGTTGAGGATTCAATCCCACTGAAGTACGTTCCACATATTAATCGTGGAAGTGTGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACTTAAGGTTTGCACCGGGAGGTCAGCTAATACCAAGCACTCGGAGTAAAACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGAGTGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGCGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTATCCATTGTCACGGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACCCGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCTAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCCGCAGCTGGAACACCTGAATGGATGGCGCCAGAAGTACTACGTGATGAACCCTCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATCTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATTGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCACCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGTCGTGCAGACACACTCTCAGTTATGTGA 2613 45.54 MEMPGRRLNYTLLSQIPDDQYSGGVAGVSTTFKETSSGEGKNDRRKLERGLDWEAAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDGFGCTHDDVLRIGGDSRAQMAEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSMSSVEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTILPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQGISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWRECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAIDFRSLAKQYFSDCQLLNVVFDEASSCNHTEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDSDEKSILLHAKTSQPNSQDRDFQLYKPRDNSHNLIQPTVQVEDSIPLKYVPHINRGSVQSLLDMSQPRMDSTMDLRFAPGGQLIPSTRSKTLPLGAEDLDIPWSDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSTIMETLKPMTKQAPPQQGRADTLSVM 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33075448 33086616 - CaPI482276_10g019000.1 Cam10g1900 138563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1900 870 Pfam Ethylene-responsive protein kinase Le-CTR1 193 397 - -
Cam10g1900 870 SMART serkin_6 597 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 PRINTS Tyrosine kinase catalytic domain signature 711 729 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 PRINTS Tyrosine kinase catalytic domain signature 671 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 PRINTS Tyrosine kinase catalytic domain signature 777 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 PRINTS Tyrosine kinase catalytic domain signature 821 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 PRINTS Tyrosine kinase catalytic domain signature 758 768 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 FunFam Serine/threonine-protein kinase CTR1 676 860 - -
Cam10g1900 870 PANTHER SERINE-THREONINE PROTEIN KINASE 154 853 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam10g1900 870 SUPERFAMILY Protein kinase-like (PK-like) 579 850 IPR011009 -
Cam10g1900 870 Gene3D Transferase(Phosphotransferase) domain 1 676 864 - -
Cam10g1900 870 CDD STKc_MAP3K-like 603 850 - -
Cam10g1900 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 FunFam Serine/threonine-protein kinase isoform 1 587 675 - -
Cam10g1900 870 Pfam Protein tyrosine and serine/threonine kinase 598 850 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1900 870 ProSitePatterns Protein kinases ATP-binding region signature. 603 624 IPR017441 GO:0005524(InterPro)
Cam10g1900 870 Gene3D Phosphorylase Kinase; domain 1 590 675 - -
Cam10g1900 870 ProSiteProfiles Protein kinase domain profile. 597 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0449 Cam-Chr6:6628978 Cam10g1900 Cam-Chr10:33075448 1.10E-90 dispersed
Cam10g1900 Cam-Chr10:33075448 Cam11g1485 Cam-Chr11:27592838 4.30E-173 dispersed
Cam02g1842 Cam-Chr2:31469777 Cam10g1900 Cam-Chr10:33075448 5.80E-70 transposed
Cam05g1951 Cam-Chr5:28405675 Cam10g1900 Cam-Chr10:33075448 5.40E-116 transposed
Cam04g1097 Cam-Chr4:25112975 Cam10g1900 Cam-Chr10:33075448 4.10E-119 transposed
Cam10g1900 Cam-Chr10:33075448 Cam04g1004 Cam-Chr4:24214167 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85518 PF07714 PK_Tyr_Ser-Thr 1.60E-70 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1900 K14510 - csv:101208452 1649.41