Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1903 ATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGAGAACCTCTCTTGGTGAGGCCTGGAGAGGAGAAGATACTGCATCTGTCACAGGCGTGTCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTCCTATATGTCAAGGTCGGCAATCAAAAGCTTGTTCTGGGGACACTATCCTCAGAGAAGTTCCCACAAGTGTCTTTTGATCTGCTGTTTGACAAAGAATTTGAGCTATCTCATAATTGGAAAAACGGAAGCTTTAATTGCTTGATTTGCATTTTCTGTGCTTCCTTGACTAATACTGATTCTGAAGAGGATTTTCCTCTAGCTGCCATTGACAACGGAAAGCCAGAGCCAGAGCCAGCGCCTAAGAAAGATGCAAAGCCTGATACTTCTGGAGCGAAGAAAAAGGTGCAGATTGTAGAACCAAACAAAGGTGGCTCTAATTCAATTATTGATAGTAAGAAGAATGAAGACAGTTCTGATGAAGATGATGACGAAGATGAAGAGGGCACAGATGATGAGAATGCAAATGGGGGTGAAGAAGATGATAGTGATGATGATGAAAATGAGTTTTCTGGAGTCGATAGTGAAGACTCTGATGAGGACTCGGACGACAGTTTAGAAGAGGATGAGCAGACACCAAAAAAGGCTGAAGCAAGCAAGAAAAGACCATTAGATTCTGCTAATAAGACGCCTGCTCCTGACAAGAAGGCAAAACTCGTCACTCCTCAGAAGACTGATGGCAAGAAAGGCGTTGCTCATGTAGCTACTCCTCATCCTTCAAAGAAGACCGGGAAAATGCCCGCTGCTAATGACAAAAATAAACAGCAGACTCCCAAACTAGCTGGCGCCACATTCCCTTGCAAAACTTGCAACAGGACATTTGGGTCAGAAACTGCGTTACAATCCCACTCAAAAGCCAAGCACACAGCCGAGAAGTGA 945 44.34 MEFWGAEVKVGEPLLVRPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLLFDKEFELSHNWKNGSFNCLICIFCASLTNTDSEEDFPLAAIDNGKPEPEPAPKKDAKPDTSGAKKKVQIVEPNKGGSNSIIDSKKNEDSSDEDDDEDEEGTDDENANGGEEDDSDDDENEFSGVDSEDSDEDSDDSLEEDEQTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVATPHPSKKTGKMPAANDKNKQQTPKLAGATFPCKTCNRTFGSETALQSHSKAKHTAEK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33120380 33124333 + CaPI482276_10g019030.1 Cam10g1903 138566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1903 314 Gene3D Classic Zinc Finger 285 313 - -
Cam10g1903 314 MobiDBLite consensus disorder prediction 108 287 - -
Cam10g1903 314 Pfam C2H2-type zinc finger 287 310 IPR013087 -
Cam10g1903 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 314 IPR013087 -
Cam10g1903 314 SMART c2h2final6 287 310 IPR013087 -
Cam10g1903 314 MobiDBLite consensus disorder prediction 159 209 - -
Cam10g1903 314 FunFam Histone deacetylase HDT1 1 96 - -
Cam10g1903 314 Pfam Nucleoplasmin-like domain 3 83 IPR041232 -
Cam10g1903 314 Gene3D Nucleoplasmin core domain 1 92 - -
Cam10g1903 314 MobiDBLite consensus disorder prediction 118 135 - -
Cam10g1903 314 MobiDBLite consensus disorder prediction 210 234 - -
Cam10g1903 314 ProSitePatterns Zinc finger C2H2 type domain signature. 289 310 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1903 Cam-Chr10:33120380 Cam02g2260 Cam-Chr2:35230205 5.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52808 PF17800 NPL 3.20E-10 CL0055 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1903 - - - 0.0