Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1909 ATGATGATGATGATGATGATGATGATGGGGAAGGGGAAGGGGAAGGTGGGGGTGAAGATTTTCAGTTCCGCCATAACTTTCTTTTTCACTCTTACCCTTTTGGTCTCTCCTTCTCTTTCTTCAGATGATTCTTCTGCTCTCACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGTTTACTAAGAAATTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGGGGAGTTCAGTGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAACTTACGAGGCCCCATTGAGTCTCTAGCGCCGCTCGATCAGCTTCGCCATCTTGACCTCCATGACAACCGTTTGAACGGAACCATTTCGCCGCTTGTTAACTGTACGAATCTTAAACTGTTGTATCTTTCCGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCAGGCGACTCCTCCGGCTGGATTTGTCCGATAACAACATCCGCGGTGGAATTCCTGAGGATATTTCTAAATTGTCTAGGCTCCTCACGTTACGTTTGCAGAACAATGTCCTCTCCGGTACGGTGCCTGATCTCTCTGTTTCGCTTGTGAACCTCACTGAACTTAATTTAACCAACAATGAACTGTACGGACGGTTGCCGGACGGGATGTTTAAGAAATTCGGTGAGAAGAGTTTCACTGGAAACGAAGGGGTTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTGGTTCACCGCCGACGTCGGATTCTACCAGAACAGTACCTTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTAGTCCGAACAGTAAAGAATCTCGAAGAGGGCTCAGCCCTGGGGTGATTGTCGCGATTGTGATCGCGAATTGCGTTGCATTGCTTGTGATTATCTCGTTCATCGTCGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCGAGTTCCATGACCGGAAGCGAGAGCGGGAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAAGTGTACGCCAATGGCGGTGGTGACAGTGATGGCACTAACGCGACAGACAGAAGCAAACTAGTGTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTTTACCGTGCGGTTCTTGACGACGGTTGTACGGTGGCGGTGAAGAGGTTGAAAGATGCAAACCCATGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATTGGGAAGCTGAAACATCCCAATATTGTGAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCTAATGGGAGTCTACATTCTCTTCTCCATGGAAATCGAGGCCCAGGGAGGATTCCATTGGATTGGACGACCAGGATCAGTTTAGTTCTGGGAGCTGCTCGTGGCTTAGCAAGAATCCATGGAGAATACAGTGCTTCAAAGATTCCCCATGGGAATGTCAAATCTTCCAATGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTATCTTTGCTTCTCAACCCAGTCCATGCCATTGCAAGGTTGGGAGGCTACAAGGCCCCGGAACAAGACGAGACTAAACGTCTCTCTCAAAAAGCAGATGTTTATAGCTTTGGAGTCTTATTGCTCGAAGTCTTAACAGGACGTGCACCGTCGCTCTACCCGTCACCTTCGAACCCAAGAAGCGACGACGAAGAGCAGCCAGTGGACCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTTGATCCAGAGCTATTAAGGTACAAGAACATTGAGGAGGAGCTTGTGTCCATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCGGAAGTGGCGAAGATGATCGAAGATATTAGGGTCGAGCAATCCCCGCTCGGAGAAGATTACGACGAATCGCGCAATTCGCTTTCGCCTTCCCTAGCCACCACAGAAGATGGTATGTAG 2067 48.38 MMMMMMMMMGKGKGKVGVKIFSSAITFFFTLTLLVSPSLSSDDSSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRHLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTELNLTNNELYGRLPDGMFKKFGEKSFTGNEGVCGSSPLPICSVTGSPPTSDSTRTVPSNPSSLPQNPIISPNSKESRRGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGM 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33160136 33162307 + CaPI482276_10g019090.1 Cam10g1909 138572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1909 688 Gene3D Ribonuclease Inhibitor 127 246 IPR032675 -
Cam10g1909 688 SMART LRR_typ_2 152 176 IPR003591 -
Cam10g1909 688 SMART LRR_typ_2 200 224 IPR003591 -
Cam10g1909 688 SMART LRR_typ_2 105 129 IPR003591 -
Cam10g1909 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 455 668 - -
Cam10g1909 688 MobiDBLite consensus disorder prediction 247 281 - -
Cam10g1909 688 ProSiteProfiles Protein kinase domain profile. 379 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1909 688 FunFam Leucine-rich repeat receptor-like protein kinase 40 195 - -
Cam10g1909 688 SUPERFAMILY Protein kinase-like (PK-like) 383 656 IPR011009 -
Cam10g1909 688 Pfam Leucine Rich repeats (2 copies) 107 142 IPR025875 -
Cam10g1909 688 SUPERFAMILY L domain-like 41 221 - -
Cam10g1909 688 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Cam10g1909 688 Gene3D Ribonuclease Inhibitor 37 126 IPR032675 -
Cam10g1909 688 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515(InterPro)
Cam10g1909 688 Pfam Leucine Rich Repeat 202 220 IPR001611 GO:0005515(InterPro)
Cam10g1909 688 ProSiteProfiles Leucine-rich repeat profile. 107 129 IPR001611 GO:0005515(InterPro)
Cam10g1909 688 MobiDBLite consensus disorder prediction 247 282 - -
Cam10g1909 688 MobiDBLite consensus disorder prediction 663 688 - -
Cam10g1909 688 Pfam Protein tyrosine and serine/threonine kinase 383 654 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1909 688 CDD STKc_IRAK 385 659 - -
Cam10g1909 688 FunFam pollen receptor-like kinase 1 350 454 - -
Cam10g1909 688 Gene3D Phosphorylase Kinase; domain 1 352 454 - -
Cam10g1909 688 MobiDBLite consensus disorder prediction 670 688 - -
Cam10g1909 688 MobiDBLite consensus disorder prediction 318 353 - -
Cam10g1909 688 MobiDBLite consensus disorder prediction 318 333 - -
Cam10g1909 688 PANTHER OS05G0588300 PROTEIN 26 665 IPR050994 -
Cam10g1909 688 Gene3D Transferase(Phosphotransferase) domain 1 455 677 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1742 Cam-Chr1:31033860 Cam10g1909 Cam-Chr10:33160136 2.10E-71 dispersed
Cam05g2445 Cam-Chr5:32390926 Cam10g1909 Cam-Chr10:33160136 4.30E-62 dispersed
Cam06g1167 Cam-Chr6:22363903 Cam10g1909 Cam-Chr10:33160136 3.20E-91 dispersed
Cam09g0904 Cam-Chr9:9316202 Cam10g1909 Cam-Chr10:33160136 1.40E-57 dispersed
Cam10g1909 Cam-Chr10:33160136 Cam11g0145 Cam-Chr11:3132149 1.70E-71 dispersed
Cam10g1909 Cam-Chr10:33160136 Cam11g0283 Cam-Chr11:4305745 5.40E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85519 PF00069 Pkinase 3.20E-33 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1909 - - - 0.0