Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1913 ATGGAATGGGCTACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCACCCGAATCTTCCTTTGGGTTTCTCTATAACTATAATCTTGAACAATATCAGAGCGTAGATGTGAAGCATTCGGCGATGGCAGGGGCGTCGGAGACAGTGCTGCAAGGGCTAGTTCCAGGGATGGATATGAACAGCTATGGCAATTTGGAGAAGAAGAAGCGGCTGAGTAGCGAGCAGCTCGAGTCGCTTGAACGAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGAAAGCAGAAGCTGTCGAAGGAACTCGGTCTGCAGCCTCGTCAGATTGCCGTTTGGTTTCAGAACCGTCGTGCGAGGTGGAAGGCAAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAGGAGTTTGATGCCATTTCTAGAGAGAAACACAAGCTTCAAGAAGAGGTAATGAAGCTCAAGAGCATGCTGAGAGAACTTCAAGCTGCAAGGAATCAAGTGTCGACGGTGTACACCGACTTGTCGGGGGAGGAGACAGTGGAAAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAACCGAGACCAGTGGCTGCAGCAGCAGCAGTGGCGGCCGCAAACCACTACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACTGAGGATTACAACCCCATGTCTCCAACTTTCTGGGGTTCTCTCCCATCCTCTTATCATCCCCAGTAG 723 52.14 MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQSVDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVESTSVGAGCSSKPRPVAAAAAVAAANHYPTPPEQCNYVFNTEDYNPMSPTFWGSLPSSYHPQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33197246 33199788 + CaPI482276_10g019130.1 Cam10g1913 138576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1913 240 Coils Coil 113 164 - -
Cam10g1913 240 SUPERFAMILY Homeodomain-like 55 123 IPR009057 -
Cam10g1913 240 SMART HOX_1 63 125 IPR001356 GO:0003677(InterPro)
Cam10g1913 240 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam10g1913 240 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677(InterPro)
Cam10g1913 240 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677(InterPro)
Cam10g1913 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 178 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cam10g1913 240 CDD homeodomain 66 122 IPR001356 GO:0003677(InterPro)
Cam10g1913 240 FunFam Putative homeobox-leucine zipper protein ATHB-51 63 126 - -
Cam10g1913 240 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g1913 240 Gene3D - 65 125 - -
Cam10g1913 240 Coils Coil 61 81 - -
Cam10g1913 240 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
Cam10g1913 240 Pfam Homeodomain 66 119 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0923 Cam-Chr7:22790873 Cam10g1913 Cam-Chr10:33197246 3.10E-19 dispersed
Cam09g0376 Cam-Chr9:4132383 Cam10g1913 Cam-Chr10:33197246 6.60E-13 dispersed
Cam10g1725 Cam-Chr10:31297265 Cam10g1913 Cam-Chr10:33197246 2.40E-13 dispersed
Cam10g1913 Cam-Chr10:33197246 Cam11g1455 Cam-Chr11:27273164 3.90E-15 dispersed
Cam01g1978 Cam-Chr1:33074518 Cam10g1913 Cam-Chr10:33197246 1.30E-20 transposed
Cam10g1913 Cam-Chr10:33197246 Cam04g0993 Cam-Chr4:24063721 9.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52811 PF00046 Homeodomain 1.90E-17 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1913 - - - 0.0