Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1914 ATGGCTTCGTCGAAGGAAATGAAGAAGGAGAGAGCAGAGGCGGCGGCAAGGCTTGCTGCTTCCGATCTCAGAGACGTTAACAGAGAAGAGGAGCAGCAGGCGGCGGCGCCAAAAACCGAGAGAAAAGCCACGGTGGAGGTCGTGGAGGCGGACCGGTCGACGGTGCAAGATCAGCAGCAGAGGTCCGGCGTGATTGGATCAGTACTGAAGGCAGTGCAGGACACGTACGAACACGCGAAGGAAGCGGTGGTCGGAAAGAGCCACGAAGCGGAGGAGAAAGGCCGAGAAGTGAAGGACACGTCTGCGGAGAAGGCAAGAGAGACGACCGATGCGGCAGGGAGGAAAATGGACGAGTACGGAAGTGCTGCGGCGGAGAAGGCGAGGGAGACGAAGGAAGCTGCTGGAGAGACGGCAGCCTCAGCAAGGGGGAAAATGAGCGAATATGGAGAGAAAACGAGGGATAAAACTGGCGAATATAAGGATTACACGGCGGAGAAGGCAAGGGAGACTAAGGATGCAGCGGCGAGAAAAGCAGGGGAATACAAAGATTACACGGCCGAGAAGACGTCGGAGGCTAAAGGAAAGGCTGGCGAGTACAAGGATTATGCAGCAGAGAAGGCGAAGGAAGCGAAGGACGCTGCAGCAAGAAAAGCAGGGGAATACAAAGATTACACCGCCGAGAAGGCGAGGGAAGCGACAGAATCGGCGAAGGGGAAGGCCGGTGAGTACAAGGATTACGCGGCAGAGAAGGCTAATCAAGCGAAGGAGAAGGCGGTGGAGTATAAGGACTACACGGCGGATAAGGCTAAGGAGACGAAGGAGGCGGCAGCAAGAAAAACAGGGGAATACAGAGACTACGCGGCGGAGAAAGCGAGAGAGACGACAGATTACACAGCGGAGAAGGCAAAAGAAGGGAAAGATACGACGGTGAGCAAACTTGGGGAATTGAAAGATTCAGCGGCCGATGCTGCAAAGAGAGCTATGGAATATTTTTCTGGAAAGAAAGAGGAAGCCAAGGAGAAGGCATACGAGACAAAAGAAGTCGCAGAGGAATGGCAGGAAAAGATGGGGGAATCAGAGGAGGATACAAGGAGGAGGATGGAGGATCTCAGGCTGCAGGGAGAAGGAAGGAGGGGCAGCAGAGAAGAAGCAAAAGTGACACTCGAACGTAATAGGGGCGGTGGTGGCGCGGTGGTAGTAGGTCTGGAGGAGTCGCGGCCGGGGGCGTTGGCCTCAACTTTGAAGCAAGCAGATGACATGGCTGGGCAGACGTTCAACGACGTGGGTAGAATGGACGACGAGGAGGGTTTCATCAATAACGCGGCAGGAGCTAAGCATCCCCAGCGGCCATGGTTCTCAAGTTCGTCAAATCTTTCATCTCTGTCTCTTATCCTGTTAGATCTGATTGCCATTTTGATTGCATATACTCTGGTTCGTAGTTTGTTTAAAGGGGAAGATTTAGATGGACAGTTGTTTGCTTCTAGGACTGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGGTGATTCTCAGGTGTTTCTCTTTGCCAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCTTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACCAGGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTAATCCAGAAAAAGAGAGCTGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGGGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAATGTTGCCAAGGGACCTGCATCCAAGGGTCCAAAGCTCGGTGGTGGTGGCGGAAAGCGTTGA 1968 52.64 MASSKEMKKERAEAAARLAASDLRDVNREEEQQAAAPKTERKATVEVVEADRSTVQDQQQRSGVIGSVLKAVQDTYEHAKEAVVGKSHEAEEKGREVKDTSAEKARETTDAAGRKMDEYGSAAAEKARETKEAAGETAASARGKMSEYGEKTRDKTGEYKDYTAEKARETKDAAARKAGEYKDYTAEKTSEAKGKAGEYKDYAAEKAKEAKDAAARKAGEYKDYTAEKAREATESAKGKAGEYKDYAAEKANQAKEKAVEYKDYTADKAKETKEAAARKTGEYRDYAAEKARETTDYTAEKAKEGKDTTVSKLGELKDSAADAAKRAMEYFSGKKEEAKEKAYETKEVAEEWQEKMGESEEDTRRRMEDLRLQGEGRRGSREEAKVTLERNRGGGGAVVVGLEESRPGALASTLKQADDMAGQTFNDVGRMDDEEGFINNAAGAKHPQRPWFSSSSNLSSLSLILLDLIAILIAYTLVRSLFKGEDLDGQLFASRTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33202914 33208679 - CaPI482276_10g019140.1 Cam10g1914 138577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1914 655 SMART 4TRASH 499 537 IPR011017 -
Cam10g1914 655 ProSitePatterns Ribosomal protein L24e signature. 501 518 IPR023442 -
Cam10g1914 655 MobiDBLite consensus disorder prediction 335 365 - -
Cam10g1914 655 MobiDBLite consensus disorder prediction 609 627 - -
Cam10g1914 655 Coils Coil 603 627 - -
Cam10g1914 655 MobiDBLite consensus disorder prediction 81 153 - -
Cam10g1914 655 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 497 549 - -
Cam10g1914 655 MobiDBLite consensus disorder prediction 1 44 - -
Cam10g1914 655 CDD Ribosomal_L24e_L24 495 547 IPR000988 -
Cam10g1914 655 Gene3D - 561 628 - -
Cam10g1914 655 Gene3D - 196 249 - -
Cam10g1914 655 Gene3D - 150 195 - -
Cam10g1914 655 Gene3D - 250 296 - -
Cam10g1914 655 Gene3D - 95 149 - -
Cam10g1914 655 Pfam Ribosomal protein L24e 495 558 IPR000988 -
Cam10g1914 655 PANTHER LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN 90 193 - -
Cam10g1914 655 Coils Coil 9 29 - -
Cam10g1914 655 Gene3D Ribosomal protein L24e 494 555 IPR038630 -
Cam10g1914 655 MobiDBLite consensus disorder prediction 81 135 - -
Cam10g1914 655 Coils Coil 335 355 - -
Cam10g1914 655 MobiDBLite consensus disorder prediction 609 655 - -
Cam10g1914 655 FunFam 60S ribosomal protein L24 494 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1914 Cam-Chr10:33202914 Cam04g0992 Cam-Chr4:24052591 4.80E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1914 K02896 - csv:101221754 442.195