Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1915 CATAAATTTTCTCAACTACTGGACCTCCGGCGCCGGAGACATTGCCGGTGCGTATCGTCTTCCGTCGTCAAAGTGAAAGGTGCCTTATGGCGTAACCGTGAAAAGATCACTCATCAAGGAAACAAGCTTGCGACGGATTTTTCATCATCGGCATCAGATCAGAAATCTTTATATCAAAGCAGTAATTTAAAAGTAGTTTCGTTGCTTAGTAGCTCGTCGTTGACGAGAGGCGAATGTGGATTTGAGCTCTGTTCCAACAATTGTCAGACGTCCATGGACAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCGGCAGCTGCGTCTCTCTTTATTCAGAGAGTTTGGAGGCGCTTCAGAGCGACTAAGATAGCTGCTTTGCAGCTTCAAGAAGAATGGGAGGAGTTGGTGAATAATAATTCTGGTGCACGGGGTGGCACATTCATTTCCTATAATATCTTGAGACCATTTCTCTTCTTTATCTCGTCATTTCTGAAACGACCTCAAAATATCAAGACCAAAGATATAGCCTGTATCAAGAATTGCTTTAAAATCTTGTTTGAAAGCATAAATTCTACTGAATCAAAGAACAACTTTTGCTCTTTGGCCACTGGTACATCTGAAGGAAGAAGAATATGGACTTACCAATCAAGGAAGCTTATTTCTGTATGCTTATTTATTCTTGTGCATTTCGACAAGTTGCAAGTGAAGGAGCAAGAAATTGTTGTTACAACCTCTTTGGCCATGCGCCTTATAGTTGTCTTAACTGATCATCATGGGTGGAAGAGTGTTAATGAGAACAGTCGTGCTGTTGCTGATGCAGCCGTGAAGGATTTAGTTCATTATTTGGGAACTTTTGAAAGTGGTCTTTACGTATCAGTCAGGCAATACATGTATAAATTGAGTGTCCTCCAGTCTACGCAGACCAACAGTACCATCCAGGCAAATGATTTATTAGTCACTTCTGTGAGTGCAATAACTTTAGCATTACGACCATTTCATTTAATAAATTTTGATATGATTGGTACTACTTCGTGGGAAGGGCATCATGTTGCTGAACAGTTTTGCTTGTATCTACTGACAATTCCCGGGCTTGTTCAAAATCTGCCACAAGTTCTTGTGCCAGCTGTCAAGCATCGATCTATCTTGCTACCATGCTTCTGGACTCTATTGGCCAAGAAAGAGACAATTTTGTTGGGAATGTCGGACATGGATCAGTTATCAGTTGAATGTGGCTCTAAGGTTGTTCCGGCAGTTGGGTGGGCTCTTGCTAACATTATATGTTTGGTAGCTGGGAGTGAAACTAAGGCAAGGGATTCCGGTTGGTTCAGTCAGAGTTTAGACTATGTGTTGTATGTTCGTGTGGTTGTCACTTTGGCAGAAAGCTTTTTGGCTTTGAATGGGGATTTAGGATGTGGTAAAAAGGAGAACCAAGATATCCAGAGCGACAATGTAACTTCATATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAATGTCATCTATGTCCTTAAGCACATCCTTCATCGATATGGTTAGGCCTATTTGTGAACAGAGGCATCTCACGGATCTTTTGAAAATGGTAAATACAAATGTTTATTCTGAAAGTAGCACTGCACAATCAAATAATATGGACTGTATGAAAAGCTTGAAACTGCTCGATATATCATACTTCTACATGTACATGCTCAGAATATTTTCATTATTGAATCCGTTGGTCGGATCCTTACCTATTCTTAATATGTTATCTTTTACTCCTGGATTTCTTGTTGATCTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAATGTTGCTGATGAAGCCGATGATCACTTTCCTGGCTCAAGTAAAATATCAAGTAAAAGAAAAGATGAAGTTTTTGGCAAAAAGCAAAACCCAGTCAGTAAGGATGGAAGTAGTAGGTGGGTAACTGTCTTCCATAAATTCACAAGCAAGTCACAATCGGGTAGTGATCATATGGACACAATTGAAGTTCAATCTAGTTCAAGACAGGGGGATGACAACTTATGCGATTTATGGGACATAAAATCTTTGAGTTGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGTTAGTTCTAGATGACATAGAGTTCTATGAAAAACAGGTTCCATTCAGGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAACACGCTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAAAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCACCTGCTGTATGAGAGGGATTGCAGACATCAGTTTTGTCCTCCTACCCTGTGGCTTTCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATCAGCTAACTTACGGGCAGATGATACTTTAACAGTTCCAAGCGTAGGATCAATTATTACTACCACACCACATGTGTTCCCATTTGAGGAAAGAGTTGAAATGTTTAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGTAGTCATGTTGTTGAAGATGGATTCAGACAGTTAAATTCTCTGGGGTCAAGGCTGAAATCAGCTATCCATGTTTCTTTTGTTAGTGAATGTGGCCTTCCTGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTGACTGATATAGCCAAAGCAGCATTTTCACCTGAATATGGACTATTCTCTCAAACCTCTACTCCAGACAGGCATCTTATCCCTAATGCATCTGCACGATATCTCGACAATGGTATCCAGATGTTCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGACTACTCATTTTCGCATGCTTTTGTCCACAAGCTTTTAGGCCGGTATAGCTTCCTTGATGAGCTATCAACACTTGATCCTGAGCTCTACAAGAATCTCATGTATGTCAAGTCTTTTGAGGGTGATGTCAAAGAACTCTCGCTGGATTTCACTGTAACCGAAGAATCATTTGGCAAACGACATGTTATTGAGCTTAAACATGGTGGCAAGGATATTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATTGCGGATTATAAACTTAATCGACAGATATTGCCTTTTTCAAACGCGTTTTATAGGGGTTTAACTGATCTTATATCACCGTCTTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTGCTTTCAGGTGGAAAACATGATATTGACGTTGATGATTTGAGGAAGAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACAATTAGTATTTTCTGGGAGGTTATGAAAGGATTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTGTCACCAGTTGTTCTCGAGCTCCATTACTTGGATTCAAATACCTGCAACCAGCTTTTACCATCCATAAGGTTTCGTGTGACGTACCTATATGGGCTTCAATAGGAGGACAGGATGTCGAGCGGCTTCCAACTGCTTCCACTTGCTATAATACTCTCAAGGATTTGAACTTTCTTAATGTATCTGACATCAGGCTGGCAGCTGATTGGTCCAAAGCTACATCTAATTATTCACTAGTCAGTGCATAA 3786 40.97 HKFSQLLDLRRRRHCRCVSSSVVKVKGALWRNREKITHQGNKLATDFSSSASDQKSLYQSSNLKVVSLLSSSSLTRGECGFELCSNNCQTSMDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAASLFIQRVWRRFRATKIAALQLQEEWEELVNNNSGARGGTFISYNILRPFLFFISSFLKRPQNIKTKDIACIKNCFKILFESINSTESKNNFCSLATGTSEGRRIWTYQSRKLISVCLFILVHFDKLQVKEQEIVVTTSLAMRLIVVLTDHHGWKSVNENSRAVADAAVKDLVHYLGTFESGLYVSVRQYMYKLSVLQSTQTNSTIQANDLLVTSVSAITLALRPFHLINFDMIGTTSWEGHHVAEQFCLYLLTIPGLVQNLPQVLVPAVKHRSILLPCFWTLLAKKETILLGMSDMDQLSVECGSKVVPAVGWALANIICLVAGSETKARDSGWFSQSLDYVLYVRVVVTLAESFLALNGDLGCGKKENQDIQSDNVTSYEPSDAAVLKNEMSSMSLSTSFIDMVRPICEQRHLTDLLKMVNTNVYSESSTAQSNNMDCMKSLKLLDISYFYMYMLRIFSLLNPLVGSLPILNMLSFTPGFLVDLWGVLESSLFPNVADEADDHFPGSSKISSKRKDEVFGKKQNPVSKDGSSRWVTVFHKFTSKSQSGSDHMDTIEVQSSSRQGDDNLCDLWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLVLDDIEFYEKQVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLLYERDCRHQFCPPTLWLSPARTSRPPVAVAARTHEALSANLRADDTLTVPSVGSIITTTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVVEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFSQTSTPDRHLIPNASARYLDNGIQMFEFLGRVVGKALYEGILLDYSFSHAFVHKLLGRYSFLDELSTLDPELYKNLMYVKSFEGDVKELSLDFTVTEESFGKRHVIELKHGGKDISVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGKHDIDVDDLRKNTRYTGGYTEGSRTISIFWEVMKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASIGGQDVERLPTASTCYNTLKDLNFLNVSDIRLAADWSKATSNYSLVSA 1261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33212618 33227391 + CaPI482276_10g019150.1 Cam10g1915 138578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1915 1261 CDD HECTc 892 1233 IPR000569 GO:0004842(InterPro)
Cam10g1915 1261 Gene3D Hect, E3 ligase catalytic domain 1135 1240 - -
Cam10g1915 1261 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 93 1233 IPR044611 GO:0000209(InterPro)|GO:0000209(PANTHER)|GO:0006511(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Cam10g1915 1261 Gene3D Hect, E3 ligase catalytic domain 1018 1097 - -
Cam10g1915 1261 Pfam HECT-domain (ubiquitin-transferase) 947 1233 IPR000569 GO:0004842(InterPro)
Cam10g1915 1261 ProSiteProfiles HECT domain profile. 916 1233 IPR000569 GO:0004842(InterPro)
Cam10g1915 1261 SUPERFAMILY Hect, E3 ligase catalytic domain 891 1233 IPR035983 GO:0004842(InterPro)
Cam10g1915 1261 Gene3D Hect, E3 ligase catalytic domains 894 1132 - -
Cam10g1915 1261 SMART hect_3 910 1259 IPR000569 GO:0004842(InterPro)
Cam10g1915 1261 FunFam Putative Ubiquitin-protein ligase E3C 1018 1097 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0430 Cam-Chr6:6419345 Cam10g1915 Cam-Chr10:33212618 9.00E-85 dispersed
Cam10g0415 Cam-Chr10:6482204 Cam10g1915 Cam-Chr10:33212618 6.30E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1915 K10588 - csv:101205886 2064.66