Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1918 ATGGTAACTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCGTTTATGCTATTCACAGAAAACCTGCCCAAGCTGTGGCCTCTTTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTTAGACTATGCACTTCGTTGTGATTCTCATTCACAGAAACTCTATTTCGATGCACTCAATGGAAGTTCATATCCTATCCTCAAAATCAACGCTTCGAGTCAACGTTTGGTGATCCAACCATCTCCATGGGTTGCTGGCTCTTGTATTACTCAAGACATGTTGGTTAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAATACAATTTTTCTCTTGAACTGTTCTCCTCGCCTGCTGGTTTCGCCACTCAATTGCACTCCTTCGAGTCTCTGTCACCACTACTTGGCAAGTTCAGGACGAGTCGATGAAAAAAAAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGTATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGCTGTAGAGCACTCAGGAGTATCCTCCATCTGGATGTAGAAAAGCCTGCAAATCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTCCTCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCACTGGAGCATCGGATTGTCTTCCTGCGGGTGGTTCAAACAGTCGTTCTCGTTGCCTTTGTAGAAGGCGCTACTACTGGAATCATATTCTTGGAACATGCCTGAGAACGAATAGGAAGAGCATGGTTAGACTGAGCATAAAGCTGTCGGTGTGTCTCGTTTCCTTTTTCATTCTAGCTGCGGTCATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAACAGGAAAAGCTATGTAAAGAAAGAGAGGATATGTTGAATTTAAGCCATGGCGTTAGACCAGCTAGGATGTTTCATCTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGAGTCCTAGGCAGTGGTGGCTTTGGAGAGGTTTATAAAGGTGAACTTCAAGATGGGACTATCGTAGCCGTGAAGTCGGCCAAAGTGGGTAATCTAAAGAGCACCGAACAAATACTCAACGAAGTCGGAATACTATCTCAAGTAAATCATAGGAATCTTGTGAAACTTATAGGTTGCTGTGTAGAAACTGAGCAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGATTCCTTCTTTCTTGGATTGGAGAAAAAGGCTGAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATATCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATTCTTTTAGATGATAAATTCAATGCTAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACATTAGGTTACCTAGACCCAGAATACTATCGAAATTACCAATTAACGGATAAAAGTGATGTGTATAGTTTTGGAGTTGTTCTACTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACAAGAGATGAAAATTGTGTCAATCTAGCAATCTATGTGATCCAACAAGTGCAAAATGGTGCATTCATTGACGCCATCGATAAACAGCTTATCAGTGACGATCCATCCAGCAATATACTAATCAGTGTGAAGCACTTCTTGGAGCTCGCACTCGCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTTCATGAAGGATGTACTCCAAGAACTTGAATACATAACTCAGATATTGGACAATCCAGAAATAGTTGTTGAAGAAGGTAAGTCTTAA 1917 41.42 MVTMKIPTPCLFGSYLFFLLFFSRLCYSQKTCPSCGLFEVPYPLSTNPNCGDLDYALRCDSHSQKLYFDALNGSSYPILKINASSQRLVIQPSPWVAGSCITQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLASSGRVDEKKAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRALRSILHLDVEKPANQWEEGLEIQWAPPPEPICRTQSDCTGASDCLPAGGSNSRSRCLCRRRYYWNHILGTCLRTNRKSMVRLSIKLSVCLVSFFILAAVIALITVRKSRTFSKQEKLCKEREDMLNLSHGVRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTIVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKIPSFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDKFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRDENCVNLAIYVIQQVQNGAFIDAIDKQLISDDPSSNILISVKHFLELALACLREKKVERPFMKDVLQELEYITQILDNPEIVVEEGKS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33236267 33238183 + CaPI482276_10g019180.1 Cam10g1918 138581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1918 638 CDD STKc_IRAK 352 620 - -
Cam10g1918 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1918 638 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247(InterPro)
Cam10g1918 638 FunFam Wall-associated receptor kinase-like 20 422 631 - -
Cam10g1918 638 SMART serkin_6 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1918 638 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
Cam10g1918 638 Gene3D Phosphorylase Kinase; domain 1 316 421 - -
Cam10g1918 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 623 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cam10g1918 638 SUPERFAMILY Protein kinase-like (PK-like) 322 623 IPR011009 -
Cam10g1918 638 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam10g1918 638 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g1918 638 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 320 421 - -
Cam10g1918 638 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1579 Cam-Chr2:28686186 Cam10g1918 Cam-Chr10:33236267 4.70E-33 dispersed
Cam10g1918 Cam-Chr10:33236267 Cam11g0692 Cam-Chr11:8550120 3.30E-162 dispersed
Cam10g1918 Cam-Chr10:33236267 Cam04g0932 Cam-Chr4:23437721 1.50E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85520 PF07714 PK_Tyr_Ser-Thr 1.00E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1918 - - - 0.0