Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1920 ATGCGGGCCTTCTCTTCCTTGATCTTGGCCTTAGCATTCGCCGTTCTGCCGGCGACGGTGGTTTACTGTGGCTTCCCCGTCCCACTTCTCTCTCTGCACAGGGCCTTCCCTTCTTCTCTCCCTGTCCAACTCGAAACCCTCAGAGCTCGGGACCGACTCAGGCATGCCAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTACTCGTCGGGCTGTACTTTACCAAAGTCAAATTGGGCACTCCCCCGATGGAATTTACGGTACAGATCGACACTGGAAGTGATATATTGTGGGTTAACTGCAATTCCTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCTAGCTCATCAAGTTCTTCACTCGTCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACGACTGCAACACAGTGTATAACTCAGAGTAATCAATGCAGTTACACCTTTCAGTATGGCGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTCATGGGACATTCTATGATTGCTAACTCTTCAGCTAGTGTTGTTTTTGGTTGTAGCACCTATCAGTCTGGAGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTGTCAACTCGAGGGATAACCCCTAAAGTATTTTCCCATTGTTTAAAGGGAGAAGGAAATGGTGGTGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATATCTGCAAAGCATCGCTGTCAATGGTCAGACACTGCCAATTGATCCATCTGTGTTTGCAACGTCAGTAAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCATTTGTCAGTGCTATAACTGCTGCTGTTTCCCAATCTGTAACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACTAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTCGCGGGCAGTGCATCTATGGTGTTAAAACCCGAAGAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTGTGGTGCATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATCTTAGGAGATCTTGTTATGAAAGATAAGATATTTGTATATGATTTGGCTCGCCAGCGAATCGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCAGTCACATCTGGGAAGAACGAGTTCGTCAATGCAGGGCAGTTGAGCGTGAGCGGCTCAACCCGAGATAAGCTCCTTCAATCACTAACTATGGTAGCATTAGCAATGTTAATGAGTCTCATTTTGTTCATCCACTCCCAACTTCTGTGTTTGAGTGATTTCCTTTTCGCAATGGCGGCAGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTCTACGTTGGCGACCTTCATCCTGATGTCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCCACTGGGCGCTCTCTCTCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGCAACCAATGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGACCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCGGAGGATTCTGCAAATGCTGCCATAGAGTCAATGAATGGTTTTACCATTGGTGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAATGCTGATGTTAAATATACCAATTTGTATGTGAAAAATCTTGACCCAGAGATTGGGGAAGAGCATTTGCAGGAGAAGTTCTCTGAGTTTGGAAAGATTTCCAGCATGATTATTTCACGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATAAACTTTGACAACTCTGATGATGCCAAACGGGCTTTGGAAACGCTTAATGGATCGCAACTTGGTTCTAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGACATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGATGTTACTGATGAAGAACTAAGAGAACGTTTTAGTCAGTTTGGCACCATCGCTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCTGATGAAGCTAAAAGAGCCGTGAACACTTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCCATAGCACAAAGAAAAGAGGATAGACAAATGCAATTAAAGCTTCAGTTTGCACAACGGCTGGCAGGGATTCCTGGACCGTCAACTACAATTTTTCCTGGTGGATACCCACCTTATTACTACCCAACACCAGGTGTTGTTCCACCAGTACCATCTCGTCCAGGTCTGATGTTTCCGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTATACATCTCCTGCAAGACCTGGCTTTCAACCTTCACCTGTACCTATTATTCCAAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATGAATGGACCAATGCTTTCTCATCAAAATGGAGTCCAAGCCGTCTCTTATATGCAAAATTCACAAGATGCCAATCAATCAGTTGTTACTACAAAATCATCCGGCAATCAACAGAATGGTTTCTGTGGTTATTTATTTTTCTATCTGTTGGGATCTCTTCAATTTTCTTGTGTTGAACTGAAAGGTGCTGATGGTACTAATTTGGACAAAGTTTTAGTTAAGTATGTCCCAAATGCTCGGCCATGCGAAACAAACAAAGCTTCTGGCCCCGCCTCAGCTGCTGCTTTTAATTCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAACGCAAGCCGGATCTTGCTGCGAAAATTACCGGTATGCTTCTGGAGATGGACAACTCGGAGTTGCTGCTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGACTAAGCTGTCCAACCAAGACACACTCAGTTTCTTACCAGCTGAGCTTGCAGGTCAGGATGGAATGCTTGTTTGGAACATGGATTTGTCGAATGCTGTTTTCTAA 3555 44.08 MRAFSSLILALAFAVLPATVVYCGFPVPLLSLHRAFPSSLPVQLETLRARDRLRHARILQGVVDFSVEGSSDPLLVGLYFTKVKLGTPPMEFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLVSCSDPICNSAFQTTATQCITQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSASVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSTRGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLPIDPSVFATSVNRGTIVDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEEYLMHLGFYDGAALWCIGFQKVQEGVTILGDLVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSGKNEFVNAGQLSVSGSTRDKLLQSLTMVALAMLMSLILFIHSQLLCLSDFLFAMAAVSQTTVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAMEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLTDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESMNGFTIGDKQIYVGKFVRKSDRVLANADVKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFDNSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTIASSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPTPGVVPPVPSRPGLMFPPLGMRPGWRANTYTSPARPGFQPSPVPIIPNASRQPRQNRGKMNGPMLSHQNGVQAVSYMQNSQDANQSVVTTKSSGNQQNGFCGYLFFYLLGSLQFSCVELKGADGTNLDKVLVKYVPNARPCETNKASGPASAAAFNSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLSFLPAELAGQDGMLVWNMDLSNAVF 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33250459 33261827 - CaPI482276_10g019200.1 Cam10g1920 138583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1920 1184 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Cam10g1920 1184 FunFam Polyadenylate-binding protein 779 887 - -
Cam10g1920 1184 SMART poly_2 1086 1149 IPR002004 GO:0003723(InterPro)
Cam10g1920 1184 FunFam Polyadenylate-binding protein 599 683 - -
Cam10g1920 1184 FunFam Aspartic proteinase-like protein 2 62 265 - -
Cam10g1920 1184 SUPERFAMILY RNA-binding domain, RBD 692 875 IPR035979 GO:0003676(InterPro)
Cam10g1920 1184 SUPERFAMILY PABC (PABP) domain 1071 1157 IPR036053 GO:0003723(InterPro)
Cam10g1920 1184 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Cam10g1920 1184 SUPERFAMILY RNA-binding domain, RBD 514 681 IPR035979 GO:0003676(InterPro)
Cam10g1920 1184 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1074 1151 IPR002004 GO:0003723(InterPro)
Cam10g1920 1184 Gene3D Acid Proteases 266 444 IPR021109 -
Cam10g1920 1184 SMART rrm2_1 797 869 IPR003954 GO:0003676(InterPro)
Cam10g1920 1184 SMART rrm2_1 603 675 IPR003954 GO:0003676(InterPro)
Cam10g1920 1184 SMART rrm2_1 694 766 IPR003954 GO:0003676(InterPro)
Cam10g1920 1184 FunFam Aspartic proteinase-like protein 2 266 444 - -
Cam10g1920 1184 CDD RRM4_I_PABPs 795 873 - -
Cam10g1920 1184 CDD pepsin_A_like_plant 79 437 IPR034161 -
Cam10g1920 1184 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 514 1147 IPR006515 GO:0003723(InterPro)
Cam10g1920 1184 Gene3D - 678 779 IPR012677 -
Cam10g1920 1184 Coils Coil 765 785 - -
Cam10g1920 1184 Gene3D - 1072 1161 - -
Cam10g1920 1184 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam10g1920 1184 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam10g1920 1184 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam10g1920 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 514 592 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 693 770 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 SMART rrm1_1 797 869 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 SMART rrm1_1 694 766 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 SMART rrm1_1 515 588 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 SMART rrm1_1 603 675 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 FunFam Polyadenylate-binding protein 506 598 - -
Cam10g1920 1184 Gene3D - 502 602 IPR012677 -
Cam10g1920 1184 FunFam Polyadenylate-binding protein 1072 1158 - -
Cam10g1920 1184 Gene3D - 780 883 IPR012677 -
Cam10g1920 1184 Gene3D - 603 675 IPR012677 -
Cam10g1920 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 602 679 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 Pfam RNA recognition motif 798 866 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 Pfam RNA recognition motif 604 672 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 Pfam RNA recognition motif 516 586 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 Pfam RNA recognition motif 695 763 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 Pfam Poly-adenylate binding protein, unique domain 1081 1146 IPR002004 GO:0003723(InterPro)
Cam10g1920 1184 Gene3D Acid Proteases 63 265 IPR021109 -
Cam10g1920 1184 FunFam Polyadenylate-binding protein 684 778 - -
Cam10g1920 1184 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Cam10g1920 1184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 796 873 IPR000504 GO:0003723(InterPro)
Cam10g1920 1184 PANTHER RNA BINDING PROTEIN 693 950 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cam10g1920 1184 SUPERFAMILY Acid proteases 75 441 IPR021109 -
Cam10g1920 1184 CDD RRM3_I_PABPs 692 771 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1920 K13126 - - csv:101203793 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1159 Cam-Chr8:17959582 Cam10g1920 Cam-Chr10:33250459 5.40E-120 dispersed
Cam10g1920 Cam-Chr10:33250459 Cam11g1675 Cam-Chr11:29415274 8.60E-31 dispersed
Cam03g1278 Cam-Chr3:25810226 Cam10g1920 Cam-Chr10:33250459 6.00E-92 transposed
Cam10g1485 Cam-Chr10:28555039 Cam10g1920 Cam-Chr10:33250459 4.50E-14 transposed
Cam11g0975 Cam-Chr11:16300367 Cam10g1920 Cam-Chr10:33250459 4.80E-86 transposed
Cam10g1920 Cam-Chr10:33250459 Cam02g2248 Cam-Chr2:35095451 1.70E-167 wgd
Cam10g1920 Cam-Chr10:33250459 Cam04g0981 Cam-Chr4:23945312 5.00E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1086 . . Bda01g00372 . . Bpe03g01263 . Bma10g00063 Cmo06g00420 . . Cma07g00884 . Car07g00873 . . Cpe08g01063 Bhi03g01538 . . . Hepe04g0962 . . Cla04g00942 Cam04g0981 Cec04g1102 Cco04g1163 Clacu04g1008 Cmu04g0994 Cre04g1050 . . Cone13ag1230 . Lsi01g01276 Csa06g02633 Chy08g00891 Cme04g02458 Blo07g01372 . . Bda05g01201 . Bpe02g00737 Bma01g01975 . Sed04g1426 . Cmo07g00916 Cma06g00425 . Car06g00365 . Cpe03g00220 Cpe19g00441 Bhi11g02016 Tan08g1807 Cmetu04g0283 Lac10g2940 Hepe05g0316 . . Cla10g01863 Cam10g1920 Cec10g1975 Cco10g1947 Clacu10g1937 Cmu10g2681 Cre10g2069 Lsi03g01959 . . Cme08g01252
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007392 2 1 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 36