Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1958 ATGCCGTTTCAGAGGATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCCACCCACCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCTCCCACCAGCCCTGCCGGCCTAATCAGCGCTTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCCGCCAACATCTCCGGCGGCCACCTCAACCCTGCCGTCACTTTCGGCGCCTTGGTCGGCGGTAACATCACTATCCTCCGCGGGATTCTTTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCTATTACGGGATTCTTGCCTACAGCAGGAGTGGGAGTATGGGAAGCATTTGTATTCGAGATCGCAATGACATTCGGATTAGTCTACACAGTATACGCCACCGCCATTGATCCCAAGAGAGGTGAGTTGGGAGTAATAGCACCCATTGCCATCGGGTTAATTGTGGCGGCCAACATTCTGGTGGGTGGCCCATTCACGGGAGCCTCCATGAACCCAGCAGTGGCCTTCGGACCTGCCCTGGTGTCTTGGTCTTGGGGTGACCATTGGATCTACTGGGCTGGCCCACTCATCGGCGGCGGCTTAGCCGGCATTGTGTATGAGCTCTTCTTCATTGGGTTCACCCACCAGCCCTTGCCCGCTGCAGAGTACTGA 762 57.74 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTSPAGLISASLAHGFALFVGVSTAANISGGHLNPAVTFGALVGGNITILRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGVWEAFVFEIAMTFGLVYTVYATAIDPKRGELGVIAPIAIGLIVAANILVGGPFTGASMNPAVAFGPALVSWSWGDHWIYWAGPLIGGGLAGIVYELFFIGFTHQPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33529225 33531155 + CaPI482276_10g019580.1 Cam10g1958 138621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1958 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 PANTHER AQUAPORIN-8 5 245 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cam10g1958 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Cam10g1958 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Cam10g1958 253 FunFam Probable aquaporin TIP1-1 6 253 - -
Cam10g1958 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Cam10g1958 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1958 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1519 Cam-Chr1:28726109 Cam10g1958 Cam-Chr10:33529225 3.90E-74 dispersed
Cam09g0182 Cam-Chr9:2580487 Cam10g1958 Cam-Chr10:33529225 3.00E-71 dispersed
Cam09g2056 Cam-Chr9:35147693 Cam10g1958 Cam-Chr10:33529225 8.40E-85 dispersed
Cam10g1958 Cam-Chr10:33529225 Cam10g1998 Cam-Chr10:33871730 4.70E-27 dispersed
Cam10g1958 Cam-Chr10:33529225 Cam04g0967 Cam-Chr4:23710415 2.90E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1958 K09873 - csv:101222386 459.914