Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1974 ATGGCGATCACGCTGCGCAAATCTTTCAATTCCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTCCCTCATTCCTCTTTCGAAACTCCTCCTCTTTCCCTAACGCCCTCGCCCTCGCCGACTCCGACTCCGGCGAATCCTTAACTTTCCGTCAGCTTCAAATACAAGTCTCCAAGCTCGCCCATGTCTTCATCCAACTCGGGATTCGAAAAAGCGATGTGGTTCTCATATTCGCCCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACTTTTGGGGAACTGTCAAAGCAAGTCGCTAACTGCAACCCCAAGCTCGTAATCACCGTTCCCGAACTCTGGGACACAATCGGTAAACTCAACTTGCCTTCTATAATTCTGGGTTCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCTCTTTTGTATTCATCTGGGACGACTGGGATTAGTAAGGGAGTGATTCTAACTCACAGGAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGATCTTCTTGGTGATCCTAGAAACGTGTTTTTATGCTTTCTTCCAATGTTCCATGTGTTTGGTCTCTCTATAATTGTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCAATGGCGAAGTTTGAGCTAGAAAAGGCTTTGGGGGTGGTGATGAAGTACAGGATCACTCATCTTTATGTTGTTCCACCTGTAATTATAGCTCTCACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCGTTGAAGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGTTTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGGGAATGTGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCGCAAGTTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGTGAAACAGGGGAAATTTGTGTGCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGGAAGCCACCAGCAAAACCATAGACGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTTATCAAGTGTTATGGTTTTCAGGTTGCACCGGCAGAGCTTGAAGCATTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCCGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCACCCGATAGCTCGATAAAGGAAGAAGATGTTAAAAATTTTATTGCTGGGCAGGTTGCACCATATAAGAGATTAAAAAGAGTAACCTTCACAAGTAGTGTTCCGAAGTCGGTTTCGGGAAAACTTCTAAGAAGGGAGGTCATAGCACAAGTCCGTGCCAAGATGTAA 1638 45.12 MAITLRKSFNSQSQIYTSRRPPIHFPTDPTISIPSFLFRNSSSFPNALALADSDSGESLTFRQLQIQVSKLAHVFIQLGIRKSDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFGELSKQVANCNPKLVITVPELWDTIGKLNLPSIILGSKISSKFSRPNIWGYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIIVYSQLQRGNTVVSMAKFELEKALGVVMKYRITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKFIPQARIIQGYGMTETCGVISVGNVGVESTLSGATGSLVSGVEAQVLSTETQKRLPPGETGEICVRGPNMMKGYFNNQEATSKTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPDSSIKEEDVKNFIAGQVAPYKRLKRVTFTSSVPKSVSGKLLRREVIAQVRAKM 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33665979 33670394 + CaPI482276_10g019740.1 Cam10g1974 138637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1974 545 Gene3D - 13 442 IPR042099 -
Cam10g1974 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Cam10g1974 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - GO:0016405(PANTHER)
Cam10g1974 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
Cam10g1974 545 Gene3D - 443 544 IPR045851 -
Cam10g1974 545 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Cam10g1974 545 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Cam10g1974 545 CDD 4CL 25 536 - -
Cam10g1974 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cam10g1974 545 Pfam AMP-binding enzyme 39 405 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0282 Cam-Chr3:3962252 Cam10g1974 Cam-Chr10:33665979 5.20E-193 dispersed
Cam05g2339 Cam-Chr5:31451138 Cam10g1974 Cam-Chr10:33665979 1.20E-107 dispersed
Cam07g0216 Cam-Chr7:3293407 Cam10g1974 Cam-Chr10:33665979 6.10E-107 dispersed
Cam10g1138 Cam-Chr10:24498485 Cam10g1974 Cam-Chr10:33665979 9.90E-24 dispersed
Cam10g1974 Cam-Chr10:33665979 Cam11g1290 Cam-Chr11:25467026 1.00E-103 dispersed
Cam10g1974 Cam-Chr10:33665979 Cam10g1398 Cam-Chr10:27656377 4.30E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1974 K01904 - csv:101204417 992.26