Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1975 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCCGAGCCATTTATAACCAACAACCCATCAGCTCCAACAGCGAAAAACACAGACCCTGAAGACCTCAGACCCACAGGAGAGGCTCAAGACGGAACTGGCAGAGCCACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCCGTCACTGCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATCGGGTCGGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTCAACTCTTTTGGGTCTTATGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCCGGCTTCGTCGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTAGAACAGACAATAGTTCAAATTCGAGTGGTTTTTGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGTGGTTATCTTGTCAGACACCACGCCACCAATGGCGGTCTGGCCATTGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCTGGCAAGAGCACCGTCGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCCCGAGTCGCCAATGCTCATTCCTTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATTGGGCGAACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATCATTGCACGAAATTCTTCCTATGGACGATCACCGTATTCACGTCGGTTGTCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTCAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGGTTTTTAAGTGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACCTATTAATCGGACTATCATCAGCTGCTCTTCTGTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTGGTCGCATGCACCGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTCGTAGCTGTCTTCCCTGTGGTTGTTGCGGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAGGAGAAGATTGTCAGACTATTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCCAATGGTGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCAGTCTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAACTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGATATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAACCAACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCCTATGGCCATGAATCAGCCACCGAAGCCGAGATCATTGAAGCCGCCACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGGATTGCAATTGCCCGTGCGCTGATCAGGAAGGCTGAGCTTATGCTACTAGATGAGGCAACGAGTGCACTCGATGCTGAGTCTGAGCGATCGGTCCAAGAGGCGCTCGACCGAGCTTGTTCGGGAAAAACTACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCCGATGGGTGTTACGCCAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGGATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGGGAGGATGAGGAGAGAGAGAGCTAG 4080 46.94 MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFITNNPSAPTAKNTDPEDLRPTGEAQDGTGRATNREMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEERES 1359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 33690544 33696487 + CaPI482276_10g019750.1 Cam10g1975 138638
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1975 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 676 IPR027417 -
Cam10g1975 1359 FunFam ABC transporter B family member 1 427 677 - -
Cam10g1975 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1328 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam10g1975 1359 CDD ABC_6TM_Pgp_ABCB1_D2_like 759 1074 - -
Cam10g1975 1359 CDD ABC_MTABC3_MDL1_MDL2 437 676 - -
Cam10g1975 1359 Gene3D - 1081 1332 IPR027417 -
Cam10g1975 1359 Gene3D - 427 677 IPR027417 -
Cam10g1975 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 769 1056 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam10g1975 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 673 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam10g1975 1359 FunFam ABC transporter B family member 1 1082 1332 - -
Cam10g1975 1359 MobiDBLite consensus disorder prediction 22 91 - -
Cam10g1975 1359 Pfam ABC transporter transmembrane region 115 386 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam10g1975 1359 Pfam ABC transporter transmembrane region 771 1039 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam10g1975 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 402 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam10g1975 1359 MobiDBLite consensus disorder prediction 1339 1359 - -
Cam10g1975 1359 FunFam ABC transporter B family member 1 748 1057 - -
Cam10g1975 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1331 IPR027417 -
Cam10g1975 1359 Gene3D ABC transporter type 1, transmembrane domain 991 1335 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam10g1975 1359 Pfam ABC transporter 455 604 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam10g1975 1359 PANTHER ABC TRANSPORTER B FAMILY 68 701 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cam10g1975 1359 MobiDBLite consensus disorder prediction 71 85 - -
Cam10g1975 1359 FunFam ABC transporter B family member 19 1058 1080 - -
Cam10g1975 1359 CDD ABC_6TM_Pgp_ABCB1_D1_like 113 400 - -
Cam10g1975 1359 Gene3D ABC transporter type 1, transmembrane domain 735 932 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam10g1975 1359 ProSitePatterns ABC transporters family signature. 576 590 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam10g1975 1359 FunFam ABC transporter B family member 1 100 435 - -
Cam10g1975 1359 CDD ABC_MTABC3_MDL1_MDL2 1092 1331 - -
Cam10g1975 1359 Pfam ABC transporter 1111 1259 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam10g1975 1359 SUPERFAMILY ABC transporter transmembrane region 756 1078 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam10g1975 1359 Gene3D ABC transporter type 1, transmembrane domain 100 689 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cam10g1975 1359 SMART AAA_5 464 650 IPR003593 GO:0016887(InterPro)
Cam10g1975 1359 SMART AAA_5 1119 1311 IPR003593 GO:0016887(InterPro)
Cam10g1975 1359 ProSitePatterns ABC transporters family signature. 1231 1245 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam10g1975 1359 SUPERFAMILY ABC transporter transmembrane region 101 415 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1907 Cam-Chr9:33808740 Cam10g1975 Cam-Chr10:33690544 2.80E-298 dispersed
Cam10g1063 Cam-Chr10:23366193 Cam10g1975 Cam-Chr10:33690544 7.30E-51 dispersed
Cam10g1975 Cam-Chr10:33690544 Cam10g1765 Cam-Chr10:31724847 3.80E-14 dispersed
Cam01g0547 Cam-Chr1:5851625 Cam10g1975 Cam-Chr10:33690544 9.50E-70 transposed
Cam01g2475 Cam-Chr1:36498668 Cam10g1975 Cam-Chr10:33690544 5.10E-292 transposed
Cam02g0036 Cam-Chr2:1516631 Cam10g1975 Cam-Chr10:33690544 7.90E-17 transposed
Cam02g1954 Cam-Chr2:32661758 Cam10g1975 Cam-Chr10:33690544 5.70E-10 transposed
Cam02g1960 Cam-Chr2:32713370 Cam10g1975 Cam-Chr10:33690544 5.80E-57 transposed
Cam04g1199 Cam-Chr4:26078976 Cam10g1975 Cam-Chr10:33690544 3.70E-89 transposed
Cam05g1724 Cam-Chr5:25753606 Cam10g1975 Cam-Chr10:33690544 0.00E+00 transposed
Cam09g1157 Cam-Chr9:12298209 Cam10g1975 Cam-Chr10:33690544 0.00E+00 transposed
Cam09g1879 Cam-Chr9:33401017 Cam10g1975 Cam-Chr10:33690544 0.00E+00 transposed
Cam09g2059 Cam-Chr9:35156761 Cam10g1975 Cam-Chr10:33690544 1.40E-277 transposed
Cam10g1851 Cam-Chr10:32599224 Cam10g1975 Cam-Chr10:33690544 2.50E-55 transposed
Cam11g1102 Cam-Chr11:21396705 Cam10g1975 Cam-Chr10:33690544 3.80E-282 transposed
Cam11g1357 Cam-Chr11:26294313 Cam10g1975 Cam-Chr10:33690544 2.50E-294 transposed
Cam10g1975 Cam-Chr10:33690544 Cam02g2218 Cam-Chr2:34877524 1.10E-07 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1975 K05658 - csv:101220974 2462.18