Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g1998 ATGGCGAACAACGACATCGAAATCGGAGGTCGGGGAGCGGCGTCGAGGAAGGACTATTTGGACCCGCTTCCGGCGCCGATGATCGACATGGAGGAGTTTACGAAATGGTCGTTTTACAGAGCTATCATTGCTGAATTTGTGGCGACTCTGTTGTTTCTATACGTCGCCGTTTTGACAGTGATCGGAAATAAAAGCCAGATGGACCCGCTGAACGGCGGGAATGTCTGCGGCGGAGTTGGCCCCGTCGGAATCTCGTGGGTCTTCGGCGGAATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTCGGAATGTTTATGGCAAGAAAGATATCGCTGGTCCGCGCCTTGCTCTACATCATAGCTCAGTGCTTGGGGGCGCTGTGCGGCTGCGCCTTGGTCAAGACACTCCAAAGGGATCGCTACAACCACTACGGCGGTGGCGCGAACCAGCTTGTCGATGGTTACAGCCGAGGCACCGGCCTTGCCGTCGAGATTATGGGCACCTTTGTTCTTCTCTACACCGTCTTCTCCGCCACTGATCCTAAACGTAATGCCAGAGACTCCCATGTTCCCGTCTTGGCACCACTCCCCATTGGCTTCGCTGTCTTCATGGTTCACCTCGCCACGATTCCCGTCACCGGCACTGGCATCAACCCGGCTCGAAGCTTCGGTGCCGCCGTCATCATCAATGATCGGAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCGCTGATCGGAGCAACCATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTCAGAAGCTCGCCGCCAACTCGCTATTAA 873 54.07 MANNDIEIGGRGAASRKDYLDPLPAPMIDMEEFTKWSFYRAIIAEFVATLLFLYVAVLTVIGNKSQMDPLNGGNVCGGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFMARKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINDRKVWKDHWIFWVGPLIGATIAAMYYQYVLRASAVKAIGSFRSSPPTRY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33871730 33875023 + CaPI482276_10g019980.1 Cam10g1998 138661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g1998 290 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cam10g1998 290 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Cam10g1998 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cam10g1998 290 FunFam Probable aquaporin PIP1-2 25 286 - -
Cam10g1998 290 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam10g1998 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g1958 Cam-Chr10:33529225 Cam10g1998 Cam-Chr10:33871730 4.70E-27 dispersed
Cam10g1998 Cam-Chr10:33871730 Cam10g2153 Cam-Chr10:35051659 1.00E-94 dispersed
Cam10g1998 Cam-Chr10:33871730 Cam02g2184 Cam-Chr2:34570844 1.40E-120 wgd
Cam10g1998 Cam-Chr10:33871730 Cam04g0824 Cam-Chr4:22508411 2.90E-113 wgd
Cam10g1998 Cam-Chr10:33871730 Cam05g2298 Cam-Chr5:31095131 9.50E-117 wgd
Cam10g1998 Cam-Chr10:33871730 Cam08g1194 Cam-Chr8:18281454 1.50E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g1998 K09872 - csv:101214142 551.977