Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2003 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGACGATGCTAACCCTAACCCTAACCCTAACCCTAAACCCAAACCCTCCGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCAAAATCGCTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGCGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGACGTGCGTACACCACGATCCGTCACGAGCCCTTGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCAGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCGTCCGCAGCGGCGCTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAACAATAACAATTCCGTGCTCTTCGGTGCGGGTGCTTTTGGAGTAATGAGTTCTTCGTCGTCATCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAACGGTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCGAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA 1488 44.49 MSSNPFSLLSSTTTAAFAHQHDDANPNPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHHTNNNLPSLGDISGLSQFSHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSVLFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNGNNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFAANH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33907426 33909725 - CaPI482276_10g020030.1 Cam10g2003 138666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2003 495 MobiDBLite consensus disorder prediction 1 53 - -
Cam10g2003 495 MobiDBLite consensus disorder prediction 1 26 - -
Cam10g2003 495 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 173 212 - -
Cam10g2003 495 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Cam10g2003 495 Gene3D Classic Zinc Finger 49 121 - -
Cam10g2003 495 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 146 170 - -
Cam10g2003 495 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Cam10g2003 495 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Cam10g2003 495 FunFam protein indeterminate-domain 12-like 49 118 - -
Cam10g2003 495 Gene3D Classic Zinc Finger 122 204 - -
Cam10g2003 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cam10g2003 495 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cam10g2003 495 SMART c2h2final6 112 142 IPR013087 -
Cam10g2003 495 SMART c2h2final6 70 92 IPR013087 -
Cam10g2003 495 SMART c2h2final6 147 167 IPR013087 -
Cam10g2003 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 464 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam10g2003 495 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 108 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0231 Cam-Chr3:3350558 Cam10g2003 Cam-Chr10:33907426 1.90E-86 dispersed
Cam09g0065 Cam-Chr9:1533192 Cam10g2003 Cam-Chr10:33907426 2.20E-87 dispersed
Cam09g0609 Cam-Chr9:6022191 Cam10g2003 Cam-Chr10:33907426 1.10E-80 dispersed
Cam11g0080 Cam-Chr11:2486128 Cam10g2003 Cam-Chr10:33907426 2.40E-85 transposed
Cam10g2003 Cam-Chr10:33907426 Cam04g0835 Cam-Chr4:22587034 1.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52818 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2003 K25870 - csv:101213422 760.755