Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2004 ATGACGAAAATGGGTTCAAGGGAAGGTGCTCTGCCTCGATCTAGCCAAATGGGAAACAGAGTATGCCCCTCGGTTTGCCTTTTTGGCTTTCTAGGTAGTCGATATTTGTTAAAGGAAGTGAATTTTCAAATTGAGACGGTAGCTTGTCGATCGAGATATTCACGGAACCACTTTTACTGCCGTACGTCACCGGAAAACCTACCGGGGCGCGGAGGCGAAGAATCAAAGATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTCAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCGCGGTTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACCAGATGGAACTGCGACTTCCACGAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATCAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGATATGAATGAGGAAATAGATAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA 1026 45.81 MTKMGSREGALPRSSQMGNRVCPSVCLFGFLGSRYLLKEVNFQIETVACRSRYSRNHFYCRTSPENLPGRGGEESKMSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33921121 33928125 - CaPI482276_10g020040.1 Cam10g2004 138667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2004 341 Coils Coil 295 315 - -
Cam10g2004 341 SUPERFAMILY SNARE fusion complex 239 306 - -
Cam10g2004 341 FunFam Putative syntaxin-71-like 246 307 - -
Cam10g2004 341 Gene3D - 246 307 - -
Cam10g2004 341 PANTHER SYNTAXIN 119 326 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cam10g2004 341 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cam10g2004 341 SMART tSNARE_6 241 308 IPR000727 -
Cam10g2004 341 Pfam SNARE domain 283 332 IPR000727 -
Cam10g2004 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Cam10g2004 341 Coils Coil 116 136 - -
Cam10g2004 341 CDD SNARE_Qc 251 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g2004 Cam-Chr10:33921121 Cam02g2177 Cam-Chr2:34522608 3.60E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2004 K08506 - csv:101215905 496.508