Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g2004 | ATGACGAAAATGGGTTCAAGGGAAGGTGCTCTGCCTCGATCTAGCCAAATGGGAAACAGAGTATGCCCCTCGGTTTGCCTTTTTGGCTTTCTAGGTAGTCGATATTTGTTAAAGGAAGTGAATTTTCAAATTGAGACGGTAGCTTGTCGATCGAGATATTCACGGAACCACTTTTACTGCCGTACGTCACCGGAAAACCTACCGGGGCGCGGAGGCGAAGAATCAAAGATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTCAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCGCGGTTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACCAGATGGAACTGCGACTTCCACGAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATCAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCAAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGATATGAATGAGGAAATAGATAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAATGTTAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA | 1026 | 45.81 | MTKMGSREGALPRSSQMGNRVCPSVCLFGFLGSRYLLKEVNFQIETVACRSRYSRNHFYCRTSPENLPGRGGEESKMSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 33921121 | 33928125 | - | CaPI482276_10g020040.1 | Cam10g2004 | 138667 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g2004 | 341 | Coils | Coil | 295 | 315 | - | - | |
Cam10g2004 | 341 | SUPERFAMILY | SNARE fusion complex | 239 | 306 | - | - | |
Cam10g2004 | 341 | FunFam | Putative syntaxin-71-like | 246 | 307 | - | - | |
Cam10g2004 | 341 | Gene3D | - | 246 | 307 | - | - | |
Cam10g2004 | 341 | PANTHER | SYNTAXIN | 119 | 326 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cam10g2004 | 341 | ProSitePatterns | Syntaxin / epimorphin family signature. | 252 | 291 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cam10g2004 | 341 | SMART | tSNARE_6 | 241 | 308 | IPR000727 | - | |
Cam10g2004 | 341 | Pfam | SNARE domain | 283 | 332 | IPR000727 | - | |
Cam10g2004 | 341 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 246 | 308 | IPR000727 | - | |
Cam10g2004 | 341 | Coils | Coil | 116 | 136 | - | - | |
Cam10g2004 | 341 | CDD | SNARE_Qc | 251 | 306 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam10g2004 | Cam-Chr10:33921121 | Cam02g2177 | Cam-Chr2:34522608 | 3.60E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g2004 | K08506 | - | csv:101215905 | 496.508 |