Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2023 ATGGAGCTAGCGTTCTCAGACTTCAACATTCCTGGAGATATCTTGGATTTATACTTCCCCCGAACTGTCTTCACTGTCGAAAATGGATGGCTTAACCTCATTTCTCAGCTCATTTTATTTTTTTCTTCTCCGGCAGGTCGACATCTCTCTTCACAGGCTATCGATGATGGTCGTGGCATCTTTATTTTGTCAATCGACTTTCAACAGTTCCGGAAGATTTGCGATCAACATGAGTTTTACATAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAGATGTATGAGTGCTGCAATTCATCAGGTAATGAGGACCAAGTGGGCGAACAATTTAGAAGATGTCACAAAAATTCTAGTCCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCCGCATATATTGACAGGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTTGTGCAAATGAGCTTTGATTGTGCTAAATGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGTTGTAAAAGCAAAACATTCAGTCCTGTTCGATCGACCGCTGAAGCAATTGACTTTCAAAAAATACGATTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTAGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTATATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAACCAAGGATTTTACTATTTGTATTTGGAGGCCGTTTCAATAAAAAATTCCAAGTCACAATCTACACCTGAGGAGTTGCAAGATTCTAACTCAAATGCAAGAGCAACCGAGCTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTTTCTGGGGAATGTGGTTCGGATGTCTTCCGTCAAATACTTCAATCCATTTGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTTGTTGGTGATCCTGGACTAGGAAAAAGTCAACTCCTGCAAGCGGCTGCAGCTGTTTCTCCTCGTGGTATTTATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCCGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGTTGTATAGATGAGTTCGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCGATGGAACAACAATGTGTGTCAATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGGTTTGATTTAGTTTTTATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCAGAGCACATCATGTCGCTTCATGCTGGATGTGGGGAACGCGCCTCTGCAGCAAAAGGACTACGTAAAGATATATCTCCTTTAACTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGGAGGTGGTGGTTCAAAACATGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCGAAAGATGGTGATTTTGTACCATTACCAGGTCAACTTCTTCGCAAGTATATAGCCTATGCAAGAACTTTTGTATTCCCCAGGATGTCAAAGCCCGCAGCAGACATCTTGCAAAAATTTTATTTACAACTGCGTGACCAGAATACATCAGCAGATGGTACACCAATTACTGCAAGGCAATTGGAAAGTTTGGTGAGGTTGGCAGAAGCTCGAGCACGGGTAGACCTCAGAGAAGAAATTACAGTACAAGATGCCATGGATGTGGTGGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAAATGAACATGGGGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAGTCGCAGCAGAAAGACTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAAAATTGGTCTACGAGTACCTGACATCGATACCTTCATAGAAAATCTAAACAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGCTAGAGATGGCTCTTCCACAATACCAAGCATGTATTATTCGTTGATGCTGATTGCATACTATATTTCAAGGATTGAAATAGTTAAATGTTACGAAAAGGACGCGGCTTGGCTTGATAATTATCCATAG 2463 41.17 MELAFSDFNIPGDILDLYFPRTVFTVENGWLNLISQLILFFSSPAGRHLSSQAIDDGRGIFILSIDFQQFRKICDQHEFYIMLEENPKVALRCMSAAIHQVMRTKWANNLEDVTKILVRLHNYSESMLALKNLKAAYIDRLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFSPVRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGECGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGCGERASAAKGLRKDISPLTLKNVAMENDGKGGGGSKHESLVSRLRLDKAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQKFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVNEHGVLDFGRSGGMSQQKEAKRFLSALNKQSESQQKDCFSISEIYSLADKIGLRVPDIDTFIENLNSVGYLLKKGPKTYQARDGSSTIPSMYYSLMLIAYYISRIEIVKCYEKDAAWLDNYP 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34066993 34073636 + CaPI482276_10g020230.1 Cam10g2023 138686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2023 820 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 772 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Cam10g2023 820 SMART mcm 126 694 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 Gene3D - 130 260 IPR012340 -
Cam10g2023 820 Gene3D - 314 703 IPR027417 -
Cam10g2023 820 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
Cam10g2023 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 696 IPR027417 -
Cam10g2023 820 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 FunFam DNA helicase MCM8 isoform X1 157 208 - -
Cam10g2023 820 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam10g2023 820 CDD MCM8 340 692 - -
Cam10g2023 820 Coils Coil 451 471 - -
Cam10g2023 820 SUPERFAMILY Nucleic acid-binding proteins 58 260 IPR012340 -
Cam10g2023 820 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Cam10g2023 820 Pfam MCM OB domain 130 259 IPR033762 -
Cam10g2023 820 CDD MCM8_WHD 715 778 - -
Cam10g2023 820 Gene3D - 157 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g2023 Cam-Chr10:34066993 Cam11g0371 Cam-Chr11:5186202 3.70E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2023 K10737 - csv:101211972 1460.66