Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam10g2025 | ATGAGAAAAAGCAACACTCGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGAAACAGTTGAAACTTTGTATATTATTATGGCTGTCTATTGGATTGGAGTTAGGACACAGTATTTGATAGAGGTTCCAAGTCCTGGGGATCCCATTTATTCATGA | 720 | 45.0 | MRKSNTRLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWLMLRRVPAEEAMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQETVETLYIIMAVYWIGVRTQYLIEVPSPGDPIYS | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34092939 | 34096620 | - | CaPI482276_10g020250.1 | Cam10g2025 | 138688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam10g2025 | 239 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 74 | 129 | IPR003958 | - | |
Cam10g2025 | 239 | Gene3D | Histone, subunit A | 72 | 199 | IPR009072 | GO:0046982(InterPro) | |
Cam10g2025 | 239 | PRINTS | CCAAT-binding transcription factor subunit A signature | 112 | 130 | - | - | |
Cam10g2025 | 239 | PRINTS | CCAAT-binding transcription factor subunit A signature | 131 | 149 | - | - | |
Cam10g2025 | 239 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - | |
Cam10g2025 | 239 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 96 | 112 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam10g2025 | 239 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 74 | 196 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cam10g2025 | 239 | MobiDBLite | consensus disorder prediction | 152 | 167 | - | - | |
Cam10g2025 | 239 | SUPERFAMILY | Histone-fold | 74 | 169 | IPR009072 | GO:0046982(InterPro) | |
Cam10g2025 | 239 | MobiDBLite | consensus disorder prediction | 152 | 176 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam10g0401 | Cam-Chr10:6374111 | Cam10g2025 | Cam-Chr10:34092939 | 1.30E-36 | dispersed | |
Cam10g0419 | Cam-Chr10:6543109 | Cam10g2025 | Cam-Chr10:34092939 | 6.50E-27 | dispersed | |
Cam10g2025 | Cam-Chr10:34092939 | Cam02g1439 | Cam-Chr2:27227124 | 1.30E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52820 | PF00808 | CBFD_NFYB_HMF | 9.00E-22 | CL0012 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam10g2025 | K08065 | - | csv:101212699 | 248.825 |