Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2025 ATGAGAAAAAGCAACACTCGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGAAACAGTTGAAACTTTGTATATTATTATGGCTGTCTATTGGATTGGAGTTAGGACACAGTATTTGATAGAGGTTCCAAGTCCTGGGGATCCCATTTATTCATGA 720 45.0 MRKSNTRLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWLMLRRVPAEEAMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQETVETLYIIMAVYWIGVRTQYLIEVPSPGDPIYS 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34092939 34096620 - CaPI482276_10g020250.1 Cam10g2025 138688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2025 239 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 129 IPR003958 -
Cam10g2025 239 Gene3D Histone, subunit A 72 199 IPR009072 GO:0046982(InterPro)
Cam10g2025 239 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Cam10g2025 239 PRINTS CCAAT-binding transcription factor subunit A signature 131 149 - -
Cam10g2025 239 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cam10g2025 239 ProSitePatterns NF-YB/HAP3 subunit signature. 96 112 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam10g2025 239 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 74 196 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cam10g2025 239 MobiDBLite consensus disorder prediction 152 167 - -
Cam10g2025 239 SUPERFAMILY Histone-fold 74 169 IPR009072 GO:0046982(InterPro)
Cam10g2025 239 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0401 Cam-Chr10:6374111 Cam10g2025 Cam-Chr10:34092939 1.30E-36 dispersed
Cam10g0419 Cam-Chr10:6543109 Cam10g2025 Cam-Chr10:34092939 6.50E-27 dispersed
Cam10g2025 Cam-Chr10:34092939 Cam02g1439 Cam-Chr2:27227124 1.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52820 PF00808 CBFD_NFYB_HMF 9.00E-22 CL0012 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2025 K08065 - csv:101212699 248.825