Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g2026 ATGGACGCCAAGCTTCTGCTTCTGCTTCTGCTTCTTCTCTTTCTGTTGGACGTCTCCTTTTCTCAGATGCCAGGTTTTGTGAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATATATGACTTTAAGACACTTTCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGCAACTTCGACAATAACAACGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGGCAACAATTGTCATATCTGACGCCAACACTATCGAGGTTCGAGAGCTCATATTTCTGGCTTCAACTCCTACTGTAAGCGTTTGTTTGTCAAATGCTACAACTGGACAGCCATTCATATCCACGCTTGAGCTTCGGCAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAGTTTCCACTAAATTACCGATAGATGTAGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCCGGAATGCCTGATATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTACGAGCCTGGTTTTACCAACTTAACCTTGCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACATCCCTACAGACCTTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGATGCGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGCTACCTTCCTCTTTAGCAAATCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCCTCTGGTCTTCTCAATAAAAACCTAGTTTTTGACTACTCTAGAAACATTAATCTTCACGAAGGGGGAAAAAAAAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTATCTTGCTACTTCTTGCAAAAAGGAAGAAAACGATATCGTGAACAAGATCTACTTGAAGAATCATCCTTGCCTGTACAAAGATTTGCCTCTTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTATTGAAATTGTAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGACGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTTCAGGGAAGACGAGAATTTGCAAACGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTCTCAAGAACAGGACAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGGGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAGGATGCTGCTAGAGGGATTGAGTACCTTCATACAGGCTGTATTCCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCAAAGGTTTCAGACTTTGGTCTCTCGAAGCTTGCGGTGGATGGCGCCTCCCATGTGTCCAGCATCGTTCGGGGAACTGTAGGATATTTGGACCCAGAGTATTATATCTCTCAGCAGTTAACAGACAAGAGCGACGTATATAGTTTTGGTGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAATGTAAACTTTGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATTGAGAGCGGGGACATTCAAGGGATCATCGATCCGTCGCTGCGCAATGAATATGACATTCAATCAATGTGGAAAATCGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTTAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAGGATTCAATTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCCATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCATTTGACGAGTCCATTGCTCGACCTACTGCAAGGTAG 2772 41.2 MDAKLLLLLLLLLFLLDVSFSQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWATIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPDISKAVVNIEENAQGKYRLYEPGFTNLTLPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVDLKILHLENNQLTGELPSSLANLPNLRELYVQNNMLSGTVPSGLLNKNLVFDYSRNINLHEGGKKNHVYIIVGSVIGAVVLLLATVVSCYFLQKGRKRYREQDLLEESSLPVQRFASSKGDAPKETAHCFSVIEIVEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEVTLLSRIHHRNLVQFLGYSQEQDRSMLVYEFMHNGTLKEHLYGPLTREKTISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREATATREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTAR 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34104897 34112541 - CaPI482276_10g020260.1 Cam10g2026 138689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g2026 923 Pfam Leucine Rich repeats (2 copies) 458 492 IPR025875 -
Cam10g2026 923 SUPERFAMILY L domain-like 395 502 - -
Cam10g2026 923 FunFam Leucine-rich repeat receptor-like protein kinase 573 671 - -
Cam10g2026 923 PANTHER OS07G0107800 PROTEIN-RELATED 455 876 - -
Cam10g2026 923 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524(InterPro)
Cam10g2026 923 Pfam Malectin-like domain 29 359 IPR024788 -
Cam10g2026 923 Gene3D Ribonuclease Inhibitor 374 520 IPR032675 -
Cam10g2026 923 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 672 881 - -
Cam10g2026 923 CDD STKc_IRAK 602 869 - -
Cam10g2026 923 SMART serkin_6 596 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2026 923 Gene3D Transferase(Phosphotransferase) domain 1 672 894 - -
Cam10g2026 923 ProSiteProfiles Protein kinase domain profile. 596 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2026 923 Pfam Protein kinase domain 599 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam10g2026 923 Gene3D Phosphorylase Kinase; domain 1 571 671 - -
Cam10g2026 923 SUPERFAMILY Protein kinase-like (PK-like) 584 868 IPR011009 -
Cam10g2026 923 FunFam Leucine-rich repeat protein kinase family protein 371 521 - -
Cam10g2026 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2818 Cam-Chr5:35272281 Cam10g2026 Cam-Chr10:34104897 7.90E-242 dispersed
Cam06g0073 Cam-Chr6:2591940 Cam10g2026 Cam-Chr10:34104897 8.90E-108 dispersed
Cam08g0694 Cam-Chr8:5472415 Cam10g2026 Cam-Chr10:34104897 1.40E-61 dispersed
Cam09g0034 Cam-Chr9:1303745 Cam10g2026 Cam-Chr10:34104897 7.50E-90 dispersed
Cam09g0887 Cam-Chr9:9124858 Cam10g2026 Cam-Chr10:34104897 1.10E-97 dispersed
Cam10g2026 Cam-Chr10:34104897 Cam02g1736 Cam-Chr2:30412568 1.50E-67 dispersed
Cam10g2026 Cam-Chr10:34104897 Cam10g2032 Cam-Chr10:34163794 1.60E-61 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85522 PF12819 Malectin_like 1.60E-77 CL0202 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g2026 - - - 0.0